RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJDB4470", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJDB4470 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27980101 27980101 PRJDB4470_P_NODE_86365_length_188_cov_1.496403_g85210_i0 PRJDB4470 86365 188 1.496403 2.81323764 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 42 0.0346   NR XP_067768032.1 348837 g85210 i0 51.7 0.462765957446808 29 14 46.3 0 40 126 1533 1561 XP_067768032.1 Transmembrane domain-containing protein [Spironucleus salmonicida] diamond 87 42 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida
29211614 29211614 PRJDB4470_P_NODE_117409_length_163_cov_2.877193_g116254_i0 PRJDB4470 117409 163 2.877193 4.68982459 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 67 3.46e-11   NR KAJ3437496.1 1746091 g116254 i0 61.2 0.901840490797546 49 19 90.2 0 13 159 150 198 KAJ3437496.1 endo-arabinase [Anaeramoeba flamelloides] diamond 147 67 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
30443367 30443367 PRJDB4470_P_NODE_70853_length_218_cov_2.863905_g69698_i0 PRJDB4470 70853 218 2.863905 6.2433129 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 112 4.5700000000000005e-27   NR KAJ3437496.1 1746091 g69698 i0 67.1 0.963302752293578 70 23 96.3 0 3 212 390 459 KAJ3437496.1 endo-arabinase [Anaeramoeba flamelloides] diamond 210 112 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
32687662 32687662 PRJDB4470_P_NODE_110720_length_165_cov_0.896552_g109565_i0 PRJDB4470 110720 165 0.896552 1.4793108 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 57.4 8.65e-8   NR XP_001308336.1 412133 g109565 i0 56.6 2.92727272727273 53 20 96.4 1 163 5 752 801 XP_001308336.1 DNA2/NAM7 helicase family [Trichomonas vaginalis G3] diamond 483 57.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;