RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJDB4470", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJDB4470 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2559268 2559268 PRJDB4470_P_NODE_32763_length_395_cov_16.485549_g31615_i0 PRJDB4470 32763 395 16.485549 65.11791855 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 97.1 1.72e-15   NTclustered gi|145386790|gb|EF216915.1| 180228 g31615 i0 84.158 15.6 101 15 26 1 1 101 351 252 Paramoeba pemaquidensis strain PA027 28S large subunit ribosomal RNA gene, partial sequence blastn 6162 97.1 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
3835307 3835307 PRJDB4470_P_NODE_119304_length_163_cov_0.894737_g118149_i0 PRJDB4470 119304 163 0.894737 1.45842131 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 231 1.63e-56   NTclustered gi|470522915|ref|XM_004354431.1| 1257118 g118149 i0 92.593 0.993865030674847 162 11 99 1 1 162 933 773 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_026850), partial mRNA blastn 162 231 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17861402 17861402 PRJDB4470_P_NODE_51475_length_283_cov_1.777778_g50321_i0 PRJDB4470 51475 283 1.777778 5.03111174 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 412 1.0399999999999998e-110   NTclustered gi|470509685|ref|XM_004351027.1| 1257118 g50321 i0 92.933 1 283 20 100 0 1 283 625 343 Acanthamoeba castellanii str. Neff Syntaxin7A, putative (ACA1_080580), partial mRNA blastn 283 412 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27885320 27885320 PRJDB4470_P_NODE_72865_length_214_cov_1.163636_g71710_i0 PRJDB4470 72865 214 1.163636 2.49018104 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 83.2 2.09e-18   NR XP_004333881.1 1257118 g71710 i0 49.3 1.02336448598131 73 35 99.5 2 214 2 42 114 XP_004333881.1 Hypothetical protein ACA1_273800 [Acanthamoeba castellanii str. Neff] diamond 219 83.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31549689 31549689 PRJDB4470_P_NODE_5996_length_974_cov_3.250811_g5333_i0 PRJDB4470 5996 974 3.250811 31.66289914 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 126 3.9899999999999997e-28   NR XP_004353575.1 1257118 g5333 i0 40.1 0.54517453798768 177 86 53.6 2 551 30 354 513 XP_004353575.1 S1 RNA binding domain containing protein [Acanthamoeba castellanii str. Neff] diamond 531 126 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;