RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJDB3785" and tax_phylum = "Fornicata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 2 ✖

tax_clade 1

bioproject 1

  • PRJDB3785 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28895556 28895556 PRJDB3785_S_NODE_24528_length_165_cov_0.879310_g24375_i0 PRJDB3785 24528 165 0.87931 1.4508615 Giardia lamblia P15 658858 Fornicata other_Eukaryota 53.1 2.7e-6   NR EFO62295.1 658858 g24375 i0 43.8 0.872727272727273 48 23 87.3 1 145 2 394 437 EFO62295.1 VSP [Giardia lamblia P15] diamond 144 53.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
31137983 31137983 PRJDB3785_S_NODE_12155_length_219_cov_4.335294_g12002_i0 PRJDB3785 12155 219 4.335294 9.49429386 Hexamita inflata 28002 Fornicata other_Eukaryota 86.7 1.14e-20   NR CAK8746335.1 28002 g12002 i0 72.2 1.47945205479452 54 14 74 1 7 168 1 53 CAK8746335.1 HINF_020184 [Hexamita inflata] diamond 324 86.7 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;