RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJDB3785", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJDB3785 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20409475 20409475 PRJDB3785_S_NODE_25737_length_163_cov_0.894737_g25584_i0 PRJDB3785 25737 163 0.894737 1.45842131 Olpidium brassicae 70189 Fungi Fungi 91.6 2.88e-14   NTclustered gi|358030887|dbj|AB609177.1| 70189 g25584 i0 80.315 1.23926380368098 127 19 78 4 4 130 1355 1235 Olpidium brassicae EF2 mRNA for translation elongation factor 2, partial cds, specimen_voucher: UBC:UBC F19784, clone: 2 blastn 202 91.6 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
31454594 31454594 PRJDB3785_S_NODE_19896_length_178_cov_1.186047_g19743_i0 PRJDB3785 19896 178 1.186047 2.11116366 Olpidium bornovanus 278681 Fungi Fungi 40.8 0.0231   NR KAG5458609.1 278681 g19743 i0 52.2 0.775280898876405 46 22 77.5 0 140 3 34 79 KAG5458609.1 MAG: tropomyosin, partial [Olpidium bornovanus] diamond 138 40.8 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;