RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJDB3785", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJDB3785 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25207280 25207280 PRJDB3785_S_NODE_8080_length_264_cov_2.916279_g7927_i0 PRJDB3785 8080 264 2.916279 7.69897656 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 124 1.69e-33   NR CEP02281.1 37360 g7927 i0 77.1 3.81818181818182 83 19 94.3 0 16 264 1 83 CEP02281.1 hypothetical protein PBRA_008865 [Plasmodiophora brassicae] diamond 1008 124 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27221852 27221852 PRJDB3785_S_NODE_11803_length_222_cov_1.601156_g11650_i0 PRJDB3785 11803 222 1.601156 3.55456632 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 56.2 1.8e-7   NR MES1921420.1 126728 g11650 i0 45.7 1.86486486486486 70 38 94.6 0 11 220 16 85 MES1921420.1 hypothetical protein [Bonamia ostreae] diamond 414 56.2 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae
27443608 27443608 PRJDB3785_S_NODE_17143_length_190_cov_1.056738_g16990_i0 PRJDB3785 17143 190 1.056738 2.0078022 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 86.3 2.2e-19   NR CEO98681.1 37360 g16990 i0 61.3 1.95789473684211 62 24 97.9 0 5 190 20 81 CEO98681.1 hypothetical protein PBRA_006795 [Plasmodiophora brassicae] diamond 372 86.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28832440 28832440 PRJDB3785_S_NODE_13708_length_208_cov_1.446541_g13555_i0 PRJDB3785 13708 208 1.446541 3.00880528 Bonamia ostreae 126728 SAR_Eukaryotes SAR_Eukaryotes 70.9 1.5e-12   NR MES1918613.1 126728 g13555 i0 58.7 0.908653846153846 63 22 85.1 3 207 31 163 225 MES1918613.1 ribosomal protein L5 [Bonamia ostreae] diamond 189 70.9 1 Eukaryota Sar   Endomyxa Ascetosporea Haplosporida   Bonamia Bonamia ostreae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;