RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJDB3785", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJDB3785 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27095602 27095602 PRJDB3785_S_NODE_25402_length_164_cov_0.860870_g25249_i0 PRJDB3785 25402 164 0.86087 1.4118268 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 90.5 7.24e-20   NR GDY17185.1 2026799 g25249 i0 65.4 5.70731707317073 52 18 95.1 0 160 5 283 334 GDY17185.1 cyclopropane-fatty-acyl-phospholipid synthase [Verrucomicrobiota bacterium] diamond 936 90.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27158560 27158560 PRJDB3785_S_NODE_22302_length_169_cov_1.975000_g22149_i0 PRJDB3785 22302 169 1.975 3.33775 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 41.2 0.04   NR MEI6341235.1 2026799 g22149 i0 42 0.887573964497041 50 27 85.2 1 7 150 109 158 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 150 41.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27790707 27790707 PRJDB3785_S_NODE_1684_length_615_cov_3.374558_g1549_i0 PRJDB3785 1684 615 3.374558 20.7535317 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 54.3 8.62e-5   NR MEM7396574.1 2026799 g1549 i0 29 1.29268292682927 138 92 64.9 3 87 485 205 341 MEM7396574.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 795 54.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29747908 29747908 PRJDB3785_S_NODE_7031_length_283_cov_1.876068_g6878_i0 PRJDB3785 7031 283 1.876068 5.30927244 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 99 1e-21   NR HYG84357.1 2499141 g6878 i0 58.2 0.964664310954064 91 35 93.3 2 267 4 116 206 HYG84357.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 273 99 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31422878 31422878 PRJDB3785_S_NODE_26396_length_162_cov_0.911504_g26243_i0 PRJDB3785 26396 162 0.911504 1.47663648 Opitutales bacterium 2026772 Bacteria Bacteria 49.7 4.58e-5   NR MDC0647085.1 2026772 g26243 i0 52.1 0.888888888888889 48 23 88.9 0 159 16 1248 1295 MDC0647085.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Opitutales bacterium] diamond 144 49.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
31612694 31612694 PRJDB3785_S_NODE_7916_length_267_cov_1.165138_g7763_i0 PRJDB3785 7916 267 1.165138 3.11091846 Opitutaceae bacterium 2006848 Bacteria Bacteria 43.9 0.0184   NR HXQ80725.1 2006848 g7763 i0 41.7 3.35955056179775 48 28 53.9 0 266 123 193 240 HXQ80725.1 serine/threonine-protein kinase [Opitutaceae bacterium] diamond 897 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
32435551 32435551 PRJDB3785_S_NODE_14799_length_202_cov_0.895425_g14646_i0 PRJDB3785 14799 202 0.895425 1.8087585 Opitutaceae bacterium 2006848 Bacteria Bacteria 42.4 0.0305   NR MDR1789864.1 2006848 g14646 i0 52.5 0.594059405940594 40 11 47.5 2 61 156 528 567 MDR1789864.1 hypothetical protein [Opitutaceae bacterium] diamond 120 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;