RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJDB14275" and tax_phylum = "Rotifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB14275 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16585425 16585425 PRJDB14275_P_NODE_3974_length_277_cov_4.571429_g3915_i0 PRJDB14275 3974 277 4.571429 12.66285833 Brachionus rubens 392764 Rotifera other_Eukaryota 250 8.42e-62   NTclustered gi|632795126|gb|KJ489417.1| 392764 g3915 i0 85.246 9.42599277978339 244 34 87 2 25 266 11178 10935 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 2611 250 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
18832878 18832878 PRJDB14275_P_NODE_7355_length_164_cov_2.888000_g7296_i0 PRJDB14275 7355 164 2.888 4.73632 Ploima 84394 Rotifera other_Eukaryota 158 2.82e-34   NTclustered gi|83285183|gb|DQ297730.1| 360655 g7296 i0 84.242 83.859756097561 165 23 99 3 1 162 213 49 Ascomorpha ovalis 28S ribosomal RNA gene, partial sequence blastn 13753 159 0.993710691823899 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Gastropidae Ascomorpha Ascomorpha ovalis
19134124 19134124 PRJDB14275_P_NODE_3356_length_323_cov_4.602113_g3297_i0 PRJDB14275 3356 323 4.602113 14.86482499 Brachionus rubens 392764 Rotifera other_Eukaryota 261 4.63e-65   NTclustered gi|1802791198|gb|MN256531.1| 392764 g3297 i0 82.781 36.3715170278638 302 43 92 8 20 317 11546 11842 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 11748 261 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
21685198 21685198 PRJDB14275_P_NODE_6418_length_181_cov_2.830986_g6359_i0 PRJDB14275 6418 181 2.830986 5.12408466 Dicranophorus forcipatus 360659 Rotifera other_Eukaryota 106 1.16e-18   NTclustered gi|83285185|gb|DQ297732.1| 360659 g6359 i0 90.244 20.2872928176796 82 6 44 2 102 181 685 766 Dicranophorus forcipatus 28S ribosomal RNA gene, partial sequence blastn 3672 106 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Dicranophoridae Dicranophorus Dicranophorus forcipatus
21685205 21685205 PRJDB14275_P_NODE_6798_length_173_cov_1.865672_g6739_i0 PRJDB14275 6798 173 1.865672 3.22761256 Lecane bulla 96446 Rotifera other_Eukaryota 233 4.8399999999999993e-57   NTclustered gi|61200802|gb|AY829083.1| 96446 g6739 i0 92.683 54.1618497109827 164 9 94 3 1 162 2047 1885 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 9370 233 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
30790691 30790691 PRJDB14275_P_NODE_4994_length_226_cov_1.390374_g4935_i0 PRJDB14275 4994 226 1.390374 3.14224524 Brachionus plicatilis 10195 Rotifera other_Eukaryota 129 3.8999999999999994e-36   NR RMZ94042.1 10195 g4935 i0 91.2 1.7787610619469 68 6 90.3 0 225 22 88 155 RMZ94042.1 40S ribosomal S18 [Brachionus plicatilis] diamond 402 129 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;