RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJDB14275" and tax_phylum = "Microsporidia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB14275 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8935592 8935592 PRJDB14275_P_NODE_5488_length_206_cov_3.580838_g5429_i0 PRJDB14275 5488 206 3.580838 7.37652628 Vittaforma corneae 42399 Fungi Fungi 200 6.079999999999999e-47   NTclustered gi|667639983|ref|XR_552275.1| 993615 g5429 i0 90.26 2.21844660194175 154 14 75 1 33 186 1103 1255 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 457 200 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
17860459 17860459 PRJDB14275_P_NODE_4975_length_226_cov_3.165775_g4916_i0 PRJDB14275 4975 226 3.165775 7.1546515 Microsporidium sp. LVPEI.SMW V3S1-FR 1734473 Fungi Fungi 361 2.94e-95   NTclustered gi|937656209|gb|KR303710.1| 1734473 g4916 i0 98.068 91.353982300885 207 4 92 0 20 226 769 975 Microsporidium sp. LVPEI.SMW V3S1-FR small subunit ribosomal RNA gene, partial sequence blastn 20646 361 1 Eukaryota Opisthokonta Fungi Microsporidia       Microsporidium Microsporidium sp. LVPEI.SMW V3S1-FR
18832889 18832889 PRJDB14275_P_NODE_7875_length_157_cov_1.364407_g7816_i0 PRJDB14275 7875 157 1.364407 2.14211899 Microsporidium 144516 Fungi Fungi 279 5.46e-71   NTclustered gi|2054360361|gb|MZ405762.1| 546760 g7816 i0 98.726 99.5477707006369 157 2 100 0 1 157 350 194 Uncultured Microsporidia clone OTU_5113 small subunit ribosomal RNA gene, partial sequence blastn 15629 279 1 Eukaryota Opisthokonta Fungi Microsporidia         uncultured Microsporidia
27853692 27853692 PRJDB14275_P_NODE_6085_length_189_cov_1.960000_g6026_i0 PRJDB14275 6085 189 1.96 3.7044 Vittaforma corneae ATCC 5 42399 Fungi Fungi 124 2.9899999999999997e-35   NR XP_007603933.1 993615 g6026 i0 93.7 1 63 4 100 0 1 189 35 97 XP_007603933.1 uncharacterized protein VICG_00481 [Vittaforma corneae ATCC 50505] diamond 189 124 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;