RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJDB14275", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJDB14275 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28100299 28100299 PRJDB14275_P_NODE_5285_length_214_cov_1.400000_g5226_i0 PRJDB14275 5285 214 1.4 2.996 Pseudomonadati 3379134 Bacteria Bacteria 157 1.6e-47   NR WP_323471022.1 197 g5226 i0 98.6 1.99065420560748 71 1 99.5 0 1 213 41 111 WP_323471022.1 hypothetical protein, partial [Campylobacter jejuni] diamond 426 158 0.993670886075949 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
29906241 29906241 PRJDB14275_P_NODE_6111_length_189_cov_1.086667_g6052_i0 PRJDB14275 6111 189 1.086667 2.05380063 Desulfurellales bacterium 2482794 Bacteria Bacteria 43.5 0.00942   NR TXH50790.1 2482794 g6052 i0 33.3 1 63 42 100 0 1 189 196 258 TXH50790.1 MAG: hypothetical protein E6Q97_19655 [Desulfurellales bacterium] diamond 189 43.5 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
31416981 31416981 PRJDB14275_P_NODE_6776_length_174_cov_1.125926_g6717_i0 PRJDB14275 6776 174 1.125926 1.95911124 Bacteria 2 Bacteria Bacteria 113 3.56e-30   NR PUB99708.1 210 g6717 i0 96.5 3.93103448275862 57 2 98.3 0 172 2 88 144 PUB99708.1 hypothetical protein C2S07_01860, partial [Helicobacter pylori] diamond 684 113 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32271242 32271242 PRJDB14275_P_NODE_2138_length_472_cov_1.796767_g2079_i0 PRJDB14275 2138 472 1.796767 8.48074024 Campylobacterales 213849 Bacteria Bacteria 79.7 4.21e-16   NR WP_103648631.1 199 g2079 i0 51.4 1.51271186440678 74 36 47 0 410 189 30 103 WP_103648631.1 TrbC/VirB2 family protein [Campylobacter concisus] diamond 714 79.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;