RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJDB14275", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJDB14275 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1282856 1282856 PRJDB14275_P_NODE_3422_length_318_cov_1.207885_g3363_i0 PRJDB14275 3422 318 1.207885 3.8410743 Branchiostoma floridae 7739 Chordata Chordata 52.8 0.03   NTclustered gi|1889981747|ref|XM_035801749.1| 7739 g3363 i0 100 0.264150943396226 28 0 9 0 219 246 7750 7777 PREDICTED: Branchiostoma floridae titin-like (LOC118403186), transcript variant X1, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
31891416 31891416 PRJDB14275_P_NODE_6217_length_186_cov_1.891156_g6158_i0 PRJDB14275 6217 186 1.891156 3.51755016 Chondrichthyes 7777 Chordata Chordata 67 6.6e-12   NR XP_067861470.1 212740 g6158 i0 78.4 7.20967741935484 37 8 59.7 0 177 67 128 164 XP_067861470.1 SAYSvFN domain-containing protein 1 [Heptranchias perlo] diamond 1341 67 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Hexanchiformes Hexanchidae Heptranchias Heptranchias perlo

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;