RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJDB14274", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJDB14274 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28800754 28800754 PRJDB14274_S_NODE_9868_length_205_cov_0.902778_g9790_i0 PRJDB14274 9868 205 0.902778 1.8506949 Nannocystaceae bacterium 2545255 Bacteria Bacteria 44.7 0.0048   NR MEX1365420.1 2545255 g9790 i0 36.7 0.878048780487805 60 35 83.4 2 177 7 56 115 MEX1365420.1 IgGFc-binding protein [Nannocystaceae bacterium] diamond 180 44.7 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
29678800 29678800 PRJDB14274_S_NODE_7350_length_234_cov_1.121387_g7272_i0 PRJDB14274 7350 234 1.121387 2.62404558 Pseudomonadati 3379134 Bacteria Bacteria 82 2.2e-17   NR NLY94724.1 2026763 g7272 i0 61.9 1.61538461538462 63 24 80.8 0 2 190 116 178 NLY94724.1 oligoribonuclease [Myxococcales bacterium] diamond 378 82 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;