RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJDB14274", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJDB14274 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16283667 16283667 PRJDB14274_S_NODE_3953_length_309_cov_1.266129_g3875_i0 PRJDB14274 3953 309 1.266129 3.91233861 root 1 Root_unresolved Root_unresolved 58.4 6.2e-4   NTclustered gi|2313021230|gb|CP102930.1| 959 g3875 i0 100 0.200647249190939 31 0 10 0 279 309 909492 909462 Bdellovibrio bacteriovorus strain kdesi chromosome, complete genome blastn 62 58.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
30253868 30253868 PRJDB14274_S_NODE_9612_length_207_cov_0.883562_g9534_i0 PRJDB14274 9612 207 0.883562 1.82897334 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 110 4.23e-26   NR MCB0345085.1 2053517 g9534 i0 76.6 4.63768115942029 64 15 92.8 0 15 206 247 310 MCB0345085.1 acetate--CoA ligase [Bdellovibrionales bacterium] diamond 960 110 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;