RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJDB14274" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJDB14274 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28043180 28043180 PRJDB14274_S_NODE_7905_length_226_cov_1.012121_g7827_i0 PRJDB14274 7905 226 1.012121 2.28739346 Lacunisphaera sp. 1961806 Bacteria Bacteria 44.3 0.00824   NR HTL66095.1 1961806 g7827 i0 32.3 1.64601769911504 62 42 82.3 0 218 33 246 307 HTL66095.1 hypothetical protein [Lacunisphaera sp.] diamond 372 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
29937741 29937741 PRJDB14274_S_NODE_9411_length_208_cov_1.115646_g9333_i0 PRJDB14274 9411 208 1.115646 2.32054368 Planctomycetota bacterium 2026780 Bacteria Bacteria 41.6 0.0134   NR MEM7457776.1 2026780 g9333 i0 48.7 0.5625 39 19 56.3 1 80 196 46 83 MEM7457776.1 hypothetical protein [Planctomycetota bacterium] diamond 117 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31359748 31359748 PRJDB14274_S_NODE_3456_length_330_cov_1.182156_g3378_i0 PRJDB14274 3456 330 1.182156 3.9011148 Opitutaceae bacterium 2006848 Bacteria Bacteria 44.7 0.0209   NR HRE83688.1 2006848 g3378 i0 38.1 0.572727272727273 63 38 56.4 1 238 53 401 463 HRE83688.1 prolyl oligopeptidase family serine peptidase [Opitutaceae bacterium] diamond 189 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31612653 31612653 PRJDB14274_S_NODE_7976_length_225_cov_1.170732_g7898_i0 PRJDB14274 7976 225 1.170732 2.634147 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 43.5 0.0153   NR MCU0781010.1 2562705 g7898 i0 36.5 0.693333333333333 52 24 69.3 1 188 33 284 326 MCU0781010.1 polyprenyl synthetase family protein [Akkermansiaceae bacterium] diamond 156 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;