RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJDB12578" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 7 ✖

bioproject 1

  • PRJDB12578 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3828625 3828625 PRJDB12578_S_NODE_156344_length_197_cov_1.391892_g133286_i0 PRJDB12578 156344 197 1.391892 2.74202724 Methanobacterium sp. MB1 1379702 Archaea Archaea 54.7 0.005   NTclustered gi|557945513|emb|HG425166.1| 1379702 g133286 i0 100 0.147208121827411 29 0 15 0 75 103 1495608 1495636 Methanobacterium sp. MB1 complete sequence blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. MB1
5105549 5105549 PRJDB12578_S_NODE_173905_length_182_cov_1.924812_g150847_i0 PRJDB12578 173905 182 1.924812 3.50315784 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 54.7 0.004   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g150847 i0 92.308 0.214285714285714 39 1 21 2 105 142 411607 411644 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 39 54.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola
11480147 11480147 PRJDB12578_S_NODE_148170_length_205_cov_1.301282_g125112_i0 PRJDB12578 148170 205 1.301282 2.6676281 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 52.8 0.018   NTclustered gi|2874253877|emb|OY969932.1| 176233 g125112 i0 100 0.136585365853659 28 0 14 0 37 64 2275428 2275401 MAG: uncultured Methanobacteriaceae archaeon isolate MFD09286.bin.c.5 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
28737796 28737796 PRJDB12578_S_NODE_111887_length_259_cov_2.447619_g88829_i0 PRJDB12578 111887 259 2.447619 6.33933321 Methanocorpusculum sp. 2058474 Archaea Archaea 41.6 0.0191   NR HJJ84672.1 2058474 g88829 i0 30.8 0.752895752895753 65 45 75.3 0 201 7 5 69 HJJ84672.1 hypothetical protein [Methanocorpusculum sp.] diamond 195 41.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
30348886 30348886 PRJDB12578_S_NODE_159632_length_194_cov_1.413793_g136574_i0 PRJDB12578 159632 194 1.413793 2.74275842 Metallosphaera yellowstonensis 1111107 Archaea Archaea 42.7 0.0193   NR WP_009071739.1 1111107 g136574 i0 39.1 0.989690721649485 64 27 83.5 2 18 179 49 110 WP_009071739.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase [Metallosphaera yellowstonensis] diamond 192 42.7 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera yellowstonensis
31391343 31391343 PRJDB12578_S_NODE_73196_length_458_cov_3.176039_g50163_i0 PRJDB12578 73196 458 3.176039 14.54625862 Candidatus Nanoarchaeia archaeon 2910166 Archaea Archaea 43.9 0.0198   NR MDD2444709.1 2910166 g50163 i0 37 0.301310043668122 46 29 30.1 0 103 240 2 47 MDD2444709.1 translation initiation factor [Candidatus Nanoarchaeia archaeon] diamond 138 43.9 1 Archaea   Nanobdellati Nanobdellota Candidatus Nanoarchaeia       Candidatus Nanoarchaeia archaeon
31707466 31707466 PRJDB12578_S_NODE_214877_length_162_cov_0.902655_g191819_i0 PRJDB12578 214877 162 0.902655 1.4623011 Ferroplasma sp. 2591003 Archaea Archaea 42.4 0.00539   NR WP_298279406.1 2591003 g191819 i0 39.1 0.851851851851852 46 28 85.2 0 142 5 4 49 WP_298279406.1 TA0956 family protein [Ferroplasma sp.] diamond 138 42.4 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales Ferroplasmaceae Ferroplasma Ferroplasma sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;