RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJDB12578" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB12578 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
980798 980798 PRJDB12578_S_NODE_203681_length_165_cov_1.370690_g180623_i0 PRJDB12578 203681 165 1.37069 2.2616385 Demospongiae 6042 Porifera other_Eukaryota 108 2.9e-19   NTclustered gi|321266753|gb|HQ379215.1| 469328 g180623 i0 93.151 44.030303030303 73 5 44 0 1 73 17 89 Callyspongia ramosa voucher BELUM:Mc4024 28S ribosomal RNA gene, partial sequence blastn 7265 108 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Callyspongiidae Callyspongia Callyspongia ramosa
6084017 6084017 PRJDB12578_S_NODE_215945_length_159_cov_2.436364_g192887_i0 PRJDB12578 215945 159 2.436364 3.87381876 Metazoa 33208 Porifera other_Eukaryota 52.8 0.013   NTclustered gi|2749535764|ref|XR_010695596.1| 196820 g192887 i0 100 0.39622641509434 28 0 18 0 100 127 3134 3107 PREDICTED: Dysidea avara uncharacterized lncRNA (LOC136244861), ncRNA blastn 63 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara
23933374 23933374 PRJDB12578_S_NODE_89399_length_334_cov_5.035088_g66341_i0 PRJDB12578 89399 334 5.035088 16.81719392 Haplosclerida 6049 Porifera other_Eukaryota 104 8.57e-18   NTclustered gi|1284883228|gb|KY825184.1| 178514 g66341 i0 81.022 7.08682634730539 137 20 40 4 183 317 3474 3342 Amphimedon compressa voucher MNRJ:18771 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 2367 104 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon compressa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;