RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJDB12578" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 5 ✖

tax_clade 1

bioproject 1

  • PRJDB12578 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3830644 3830644 PRJDB12578_S_NODE_212464_length_162_cov_1.823009_g189406_i0 PRJDB12578 212464 162 1.823009 2.95327458 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 294 2.03e-75   NTclustered gi|698793876|ref|XR_717098.1| 112090 g189406 i0 99.383 70.6049382716049 162 1 100 0 1 162 2309 2148 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 11438 294 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
6380361 6380361 PRJDB12578_S_NODE_144786_length_208_cov_2.270440_g121728_i0 PRJDB12578 144786 208 2.27044 4.7225152 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 346 7.460000000000001e-91   NTclustered gi|7658194|gb|AF119587.1| 120398 g121728 i0 96.635 93.0240384615385 208 7 100 0 1 208 346 553 Aphanomyces stellatus strain AR 51 large subunit ribosomal RNA gene, partial sequence blastn 19349 346 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
15302595 15302595 PRJDB12578_S_NODE_105293_length_276_cov_1.215859_g82235_i0 PRJDB12578 105293 276 1.215859 3.35577084 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 278 3.85e-70   NTclustered gi|698793876|ref|XR_717098.1| 112090 g82235 i0 85.053 101.322463768116 281 32 100 4 1 276 2247 2522 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 27965 278 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
27406018 27406018 PRJDB12578_S_NODE_170023_length_185_cov_1.875000_g146965_i0 PRJDB12578 170023 185 1.875 3.46875 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 63.9 5.41e-10   NR XP_067784566.1 4785 g146965 i0 59.1 7.13513513513514 44 18 71.4 0 133 2 28 71 XP_067784566.1 Integrase catalytic core protein [Phytophthora cinnamomi] diamond 1320 63.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
30380342 30380342 PRJDB12578_S_NODE_168813_length_186_cov_1.715328_g145755_i0 PRJDB12578 168813 186 1.715328 3.19051008 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.00486   NR KAF0683602.1 120398 g145755 i0 38.2 0.887096774193548 55 34 88.7 0 17 181 199 253 KAF0683602.1 hypothetical protein As57867_024292 [Aphanomyces stellatus] diamond 165 44.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;