RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJDB12578", tax_phylum = "Chloroflexota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJDB12578 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27411922 27411922 PRJDB12578_S_NODE_84963_length_359_cov_1.987097_g61905_i0 PRJDB12578 84963 359 1.987097 7.13367823 Chloroflexota bacterium 2026724 Bacteria Bacteria 43.1 0.0463   NR MCI0809805.1 2026724 g61905 i0 36.5 0.618384401114206 74 46 61 1 139 357 23 96 MCI0809805.1 hypothetical protein [Chloroflexota bacterium] diamond 222 43.1 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27443565 27443565 PRJDB12578_S_NODE_202263_length_166_cov_0.880342_g179205_i0 PRJDB12578 202263 166 0.880342 1.46136772 Anaerolineales bacterium 2073117 Bacteria Bacteria 42.4 0.0183   NR HJS28176.1 2073117 g179205 i0 45.7 0.632530120481928 35 19 63.3 0 109 5 229 263 HJS28176.1 saccharopine dehydrogenase NADP-binding domain-containing protein [Anaerolineales bacterium] diamond 105 42.4 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
29306000 29306000 PRJDB12578_S_NODE_174829_length_182_cov_1.015038_g151771_i0 PRJDB12578 174829 182 1.015038 1.84736916 Chloroflexota bacterium 2026724 Bacteria Bacteria 41.2 0.0411   NR MDY7018953.1 2026724 g151771 i0 61.5 0.428571428571429 26 8 39.6 1 88 159 65 90 MDY7018953.1 hypothetical protein [Chloroflexota bacterium] diamond 78 41.2 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;