RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJDB12578" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 8 ✖

tax_clade 1

bioproject 1

  • PRJDB12578 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3357 3357 PRJDB12578_S_NODE_180481_length_177_cov_2.429688_g157423_i0 PRJDB12578 180481 177 2.429688 4.30054776 Bodomorpha sp. Panama105 555789 SAR_Eukaryotes SAR_Eukaryotes 327 2.2199999999999996e-85   NTclustered gi|219524917|gb|EU709280.1| 555789 g157423 i0 100 77.5367231638418 177 0 100 0 1 177 1380 1556 Bodomorpha sp. Panama105 18S ribosomal RNA gene, partial sequence blastn 13724 327 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha sp. Panama105
2557511 2557511 PRJDB12578_S_NODE_79663_length_396_cov_2.043228_g56606_i0 PRJDB12578 79663 396 2.043228 8.09118288 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 732 0   NTclustered gi|238617602|gb|FJ973377.1| 188950 g56606 i0 100 88.1818181818182 396 0 100 0 1 396 2112 1717 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 34920 732 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
7655123 7655123 PRJDB12578_S_NODE_166427_length_188_cov_1.589928_g143369_i0 PRJDB12578 166427 188 1.589928 2.98906464 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 342 8.539999999999999e-90   NTclustered gi|238617602|gb|FJ973377.1| 188950 g143369 i0 99.468 99.3297872340426 188 1 100 0 1 188 324 137 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 18674 342 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
14030028 14030028 PRJDB12578_S_NODE_142552_length_211_cov_1.240741_g119494_i0 PRJDB12578 142552 211 1.240741 2.61796351 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 374 3.4799999999999995e-99   NTclustered gi|238617602|gb|FJ973377.1| 188950 g119494 i0 98.578 32.6255924170616 211 3 100 0 1 211 2699 2909 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 6884 374 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
15302410 15302410 PRJDB12578_S_NODE_100753_length_289_cov_1.716667_g77695_i0 PRJDB12578 100753 289 1.716667 4.96116763 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 496 1.03e-135   NTclustered gi|238617602|gb|FJ973377.1| 188950 g77695 i0 97.586 23.7162629757785 290 6 100 1 1 289 652 363 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 6854 496 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
15306362 15306362 PRJDB12578_S_NODE_206093_length_164_cov_3.130435_g183035_i0 PRJDB12578 206093 164 3.130435 5.1339134 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 303 3.42e-78   NTclustered gi|238617602|gb|FJ973377.1| 188950 g183035 i0 100 100.798780487805 164 0 100 0 1 164 829 992 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 16531 303 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
20107259 20107259 PRJDB12578_S_NODE_126176_length_232_cov_3.005464_g103118_i0 PRJDB12578 126176 232 3.005464 6.97267648 Bodomorpha 188949 SAR_Eukaryotes SAR_Eukaryotes 429 8.2e-116   NTclustered gi|33309639|gb|AF411276.1| 188950 g103118 i0 100 96.1853448275862 232 0 100 0 1 232 795 1026 Bodomorpha minima 18S ribosomal RNA gene, complete sequence blastn 22315 429 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
24226581 24226581 PRJDB12578_S_NODE_111620_length_260_cov_1.545024_g88562_i0 PRJDB12578 111620 260 1.545024 4.0170624 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 279 9.98e-71   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g88562 i0 94.475 77.7730769230769 181 10 70 0 1 181 3669 3849 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 20221 279 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;