RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJDB12578" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJDB12578 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16580883 16580883 PRJDB12578_S_NODE_200454_length_166_cov_1.743590_g177396_i0 PRJDB12578 200454 166 1.74359 2.8943594 Athalassotoga saccharophila 1441386 Bacteria Bacteria 54.7 0.004   NTclustered gi|1786463335|dbj|AP019551.1| 1441386 g177396 i0 100 0.174698795180723 29 0 17 0 72 100 1917928 1917900 Athalassotoga saccharophila NAS-01 DNA, complete genome blastn 29 54.7 1 Bacteria   Thermotogati Thermotogota Thermotogae Mesoaciditogales Mesoaciditogaceae Athalassotoga Athalassotoga saccharophila
20402962 20402962 PRJDB12578_S_NODE_153637_length_199_cov_2.753333_g130579_i0 PRJDB12578 153637 199 2.753333 5.47913267 Deinococcus irradiatisoli 2202254 Bacteria Bacteria 52.8 0.017   NTclustered gi|1392964945|gb|CP029494.1| 2202254 g130579 i0 100 0.14070351758794 28 0 14 0 1 28 1314178 1314205 Deinococcus irradiatisoli strain 17bor-2 chromosome, complete genome blastn 28 52.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus irradiatisoli
31327874 31327874 PRJDB12578_S_NODE_106696_length_272_cov_1.381166_g83638_i0 PRJDB12578 106696 272 1.381166 3.75677152 Deinococcus hopiensis 309885 Bacteria Bacteria 43.5 0.0267   NR WP_084047697.1 309885 g83638 i0 27.6 0.838235294117647 76 46 83.8 1 28 255 171 237 WP_084047697.1 endo-1,4-beta-xylanase [Deinococcus hopiensis] diamond 228 43.5 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus hopiensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;