RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJDB12578", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJDB12578 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3827876 3827876 PRJDB12578_S_NODE_136384_length_218_cov_1.508876_g113326_i0 PRJDB12578 136384 218 1.508876 3.28934968 Borrelia puertoricensis 2756107 Bacteria Bacteria 54.7 0.005   NTclustered gi|2225482330|gb|CP075379.1| 2756107 g113326 i0 100 0.13302752293578 29 0 13 0 112 140 717243 717215 Borrelia puertoricensis strain SUM chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia puertoricensis
22657822 22657822 PRJDB12578_S_NODE_206458_length_164_cov_1.800000_g183400_i0 PRJDB12578 206458 164 1.8 2.952 Treponema 157 Bacteria Bacteria 52.8 0.014   NTclustered gi|2265193197|gb|CP058347.1| 158 g183400 i0 94.286 2.13414634146341 35 1 21 1 92 125 130727 130693 Treponema denticola strain OKA3 chromosome, complete genome blastn 350 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema denticola
29589912 29589912 PRJDB12578_S_NODE_199070_length_167_cov_0.881356_g176012_i0 PRJDB12578 199070 167 0.881356 1.47186452 Treponema sp. 166 Bacteria Bacteria 43.1 0.00985   NR MCI1207897.1 166 g176012 i0 55.6 0.646706586826347 36 16 64.7 0 112 5 554 589 MCI1207897.1 1-deoxy-D-xylulose-5-phosphate synthase [Treponema sp.] diamond 108 43.1 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.
32713317 32713317 PRJDB12578_S_NODE_174440_length_182_cov_1.172932_g151382_i0 PRJDB12578 174440 182 1.172932 2.13473624 Pseudomonadati 3379134 Bacteria Bacteria 101 2.7799999999999996e-23   NR MFP3959489.1 1898206 g151382 i0 75 4.94505494505495 60 15 98.9 0 182 3 423 482 MFP3959489.1 aminopeptidase P family protein [Spirochaetaceae bacterium] diamond 900 101 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   Spirochaetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;