RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJDB12578", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJDB12578 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6386391 6386391 PRJDB12578_S_NODE_89926_length_332_cov_1.840989_g66868_i0 PRJDB12578 89926 332 1.840989 6.11208348 Campylobacter jejuni 197 Bacteria Bacteria 52.8 0.031   NTclustered gi|2562786027|gb|CP120256.1| 197 g66868 i0 96.774 4.37048192771084 31 1 9 0 103 133 1381474 1381504 Campylobacter jejuni strain PS_41_2021 chromosome, complete genome blastn 1451 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
17852260 17852260 PRJDB12578_S_NODE_102475_length_284_cov_1.106383_g79417_i0 PRJDB12578 102475 284 1.106383 3.14212772 Candidatus Thiovulum stygium 2951083 Bacteria Bacteria 52.8 0.026   NTclustered gi|2182967327|gb|CP091137.1| 2951083 g79417 i0 100 0.0985915492957746 28 0 10 0 113 140 211210 211183 MAG: Candidatus Thiovulum stygium isolate 07-Movile_MetG_Ill chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Thiovulum Candidatus Thiovulum stygium
32467096 32467096 PRJDB12578_S_NODE_174699_length_182_cov_1.150376_g151641_i0 PRJDB12578 174699 182 1.150376 2.09368432 Campylobacter sp. LR291e 2593546 Bacteria Bacteria 79.3 2.08e-15   NR WP_150180431.1 2593546 g151641 i0 56.7 1.97802197802198 60 26 98.9 0 2 181 821 880 WP_150180431.1 FAD-binding and (Fe-S)-binding domain-containing protein [Campylobacter sp. LR291e] diamond 360 79.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. LR291e

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;