RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJDB12578", tax_kingdom = "Fungi" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJDB12578 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7653998 7653998 PRJDB12578_S_NODE_136807_length_217_cov_5.398810_g113749_i0 PRJDB12578 136807 217 5.39881 11.7154177 Phycomyces blakesleeanus 4837 Fungi Fungi 84.2 6.8e-12   NTclustered gi|82398466|gb|DQ273800.1| 4837 g113749 i0 79.661 5.89861751152074 118 22 54 2 46 163 1823 1708 Phycomyces blakesleeanus isolate AFTOL-ID 184 28S ribosomal RNA gene, partial sequence blastn 1280 84.2 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Phycomycetaceae Phycomyces Phycomyces blakesleeanus
22657906 22657906 PRJDB12578_S_NODE_71738_length_475_cov_2.746479_g48719_i0 PRJDB12578 71738 475 2.746479 13.04577525 Mucor 4830 Fungi Fungi 209 2.59e-49   NTclustered gi|168378|gb|M26190.1|MRARRHA 4841 g48719 i0 85.294 36.6484210526316 204 28 43 2 54 257 2022 2223 M.racemosus (Zygomycetes) 25S ribosomal RNA gene blastn 17408 209 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;