RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where bioproject = "PRJDB12578", tax_clade = "Opisthokonta" and tax_phylum = "Rotifera"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 13 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 13 ✖

bioproject 1

  • PRJDB12578 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
486 486 PRJDB12578_S_NODE_105321_length_276_cov_1.127753_g82263_i0 PRJDB12578 105321 276 1.127753 3.11259828 Proales similis 360698 Rotifera other_Eukaryota 65.8 3.26e-6   NTclustered gi|1859640894|gb|MN970216.1| 360698 g82263 i0 85.075 0.242753623188406 67 7 24 3 102 167 11535 11599 Proales similis mitochondrion, complete genome blastn 67 65.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis
2996 2996 PRJDB12578_S_NODE_170681_length_185_cov_1.139706_g147623_i0 PRJDB12578 170681 185 1.139706 2.1084561 Lepadella patella 231622 Rotifera other_Eukaryota 259 8.67e-65   NTclustered gi|83285192|gb|DQ297739.1| 231622 g147623 i0 91.935 62.1891891891892 186 14 100 1 1 185 515 330 Lepadella patella 28S ribosomal RNA gene, partial sequence blastn 11505 259 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae Lepadella Lepadella patella
3828985 3828985 PRJDB12578_S_NODE_166144_length_188_cov_2.402878_g143086_i0 PRJDB12578 166144 188 2.402878 4.51741064 Lepadella patella 231622 Rotifera other_Eukaryota 243 8.91e-60   NTclustered gi|83285192|gb|DQ297739.1| 231622 g143086 i0 94.34 76.7287234042553 159 7 84 2 30 187 1 158 Lepadella patella 28S ribosomal RNA gene, partial sequence blastn 14425 243 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae Lepadella Lepadella patella
9908915 9908915 PRJDB12578_S_NODE_154028_length_199_cov_1.506667_g130970_i0 PRJDB12578 154028 199 1.506667 2.99826733 Ploima 84394 Rotifera other_Eukaryota 313 7.18e-81   NTclustered gi|72153738|gb|DQ089740.1| 204736 g130970 i0 94.975 97.9798994974874 199 10 100 0 1 199 2522 2324 Brachionus urceolaris 28S ribosomal RNA gene, partial sequence blastn 19498 313 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus urceolaris
11481601 11481601 PRJDB12578_S_NODE_188890_length_172_cov_1.138211_g165832_i0 PRJDB12578 188890 172 1.138211 1.95772292 Trichocerca elongata 360704 Rotifera other_Eukaryota 235 1.33e-57   NTclustered gi|83285210|gb|DQ297757.1| 360704 g165832 i0 91.279 14.2093023255814 172 15 100 0 1 172 336 507 Trichocerca elongata 28S ribosomal RNA gene, partial sequence blastn 2444 235 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Trichocercidae Trichocerca Trichocerca elongata
11484607 11484607 PRJDB12578_S_NODE_59850_length_669_cov_7.919355_g37538_i0 PRJDB12578 59850 669 7.919355 52.98048495 Adineta vaga complex sp. B JFF-2016 1813165 Rotifera other_Eukaryota 1122 0   NTclustered gi|1005055631|gb|KU860774.1| 1813165 g37538 i0 96.87 41.4603886397608 671 19 100 2 1 669 2107 1437 Adineta vaga complex sp. B JFF-2016 isolate H158a 28S ribosomal RNA gene, partial sequence blastn 27737 1122 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. B JFF-2016
17558657 17558657 PRJDB12578_S_NODE_159094_length_194_cov_3.186207_g136036_i0 PRJDB12578 159094 194 3.186207 6.18124158 Ploima 84394 Rotifera other_Eukaryota 311 2.5000000000000004e-80   NTclustered gi|61200811|gb|AY829085.1| 84397 g136036 i0 95.408 99.5412371134021 196 7 100 1 1 194 1449 1644 Asplanchna sieboldi 28S ribosomal RNA gene, partial sequence blastn 19311 311 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sieboldii
18832506 18832506 PRJDB12578_S_NODE_163635_length_190_cov_3.021277_g140577_i0 PRJDB12578 163635 190 3.021277 5.7404263 Metazoa 33208 Rotifera other_Eukaryota 351 1.4399999999999997e-92   NTclustered gi|37785582|gb|AY210469.1| 96448 g140577 i0 100 99.321052631579 190 0 100 0 1 190 2960 3149 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 18871 351 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
21678500 21678500 PRJDB12578_S_NODE_140718_length_213_cov_1.262195_g117660_i0 PRJDB12578 140718 213 1.262195 2.68847535 Lepadella patella 231622 Rotifera other_Eukaryota 263 7.95e-66   NTclustered gi|83285192|gb|DQ297739.1| 231622 g117660 i0 89.202 19.0798122065728 213 20 99 3 3 213 727 516 Lepadella patella 28S ribosomal RNA gene, partial sequence blastn 4064 263 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae Lepadella Lepadella patella
21679239 21679239 PRJDB12578_S_NODE_160158_length_193_cov_3.312500_g137100_i0 PRJDB12578 160158 193 3.3125 6.393125 Adineta vaga 104782 Rotifera other_Eukaryota 357 3.1499999999999996e-94   NTclustered gi|259129963|gb|GQ398061.1| 104782 g137100 i0 100 5.66839378238342 193 0 100 0 1 193 10236 10044 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 1094 357 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
22954835 22954835 PRJDB12578_S_NODE_167919_length_187_cov_1.405797_g144861_i0 PRJDB12578 167919 187 1.405797 2.62884039 Brachionus angularis 396692 Rotifera other_Eukaryota 132 1.9999999999999998e-26   NTclustered gi|1999716433|gb|MT875425.1| 396692 g144861 i0 85.075 40.1176470588235 134 15 72 4 1 134 10012 10140 Brachionus angularis chromosome I mitochondrion, complete sequence blastn 7502 132 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus angularis
29716259 29716259 PRJDB12578_S_NODE_156310_length_197_cov_1.391892_g133252_i0 PRJDB12578 156310 197 1.391892 2.74202724 Rotaria sp. Silwood1 2762511 Rotifera other_Eukaryota 45.4 0.00226   NR CAF3365564.1 2762511 g133252 i0 40.4 0.868020304568528 57 34 86.8 0 21 191 81 137 CAF3365564.1 unnamed protein product [Rotaria sp. Silwood1] diamond 171 45.4 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1
30790652 30790652 PRJDB12578_S_NODE_163054_length_191_cov_1.436620_g139996_i0 PRJDB12578 163054 191 1.43662 2.7439442 Didymodactylos carnosus 1234261 Rotifera other_Eukaryota 89.4 1.82e-19   NR CAF0893366.1 1234261 g139996 i0 61.3 1.94764397905759 62 24 97.4 0 5 190 178 239 CAF0893366.1 unnamed protein product [Didymodactylos carnosus] diamond 372 89.4 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Didymodactylos Didymodactylos carnosus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;