RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where bioproject = "PRJDB12578", tax_clade = "Opisthokonta" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 13 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 13 ✖

bioproject 1

  • PRJDB12578 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2256199 2256199 PRJDB12578_S_NODE_90302_length_330_cov_1.957295_g67244_i0 PRJDB12578 90302 330 1.957295 6.4590735 Eukaryota 2759 Fungi Fungi 52.8 0.031   NTclustered gi|2468672681|ref|NC_072522.1| 68777 g67244 i0 100 0.424242424242424 28 0 8 0 104 131 120654 120627 Cyathus striatus mitochondrion, complete genome blastn 140 52.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Nidulariaceae Cyathus Cyathus striatus
2550654 2550654 PRJDB12578_S_NODE_112143_length_259_cov_1.238095_g89085_i0 PRJDB12578 112143 259 1.238095 3.20666605 Wallemia ichthyophaga 245174 Fungi Fungi 52.8 0.024   NTclustered gi|685947557|ref|XM_009269856.1| 1299270 g89085 i0 100 0.108108108108108 28 0 11 0 173 200 1747 1720 Wallemia ichthyophaga EXF-994 Polarized growth protein rax2 (J056_004666), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Wallemiomycetes Wallemiales Wallemiaceae Wallemia Wallemia ichthyophaga
3830320 3830320 PRJDB12578_S_NODE_203304_length_165_cov_1.793103_g180246_i0 PRJDB12578 203304 165 1.793103 2.95861995 Melampsora laricis-populina 203908 Fungi Fungi 54.7 0.004   NTclustered gi|599400019|ref|XM_007412100.1| 747676 g180246 i0 96.97 0.2 33 0 19 1 31 62 298 330 Melampsora larici-populina 98AG31 uncharacterized protein (MELLADRAFT_72305), mRNA blastn 33 54.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Melampsoraceae Melampsora Melampsora laricis-populina
6382439 6382439 PRJDB12578_S_NODE_202326_length_166_cov_0.880342_g179268_i0 PRJDB12578 202326 166 0.880342 1.46136772 Cystobasidium laryngis 105772 Fungi Fungi 274 2.73e-69   NTclustered gi|1358186635|gb|MH047192.1| 105772 g179268 i0 96.386 102.963855421687 166 6 100 0 1 166 3828 3993 Cystobasidium laryngis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17092 274 1 Eukaryota Opisthokonta Fungi Basidiomycota Cystobasidiomycetes Cystobasidiales Cystobasidiaceae Cystobasidium Cystobasidium laryngis
11184118 11184118 PRJDB12578_S_NODE_202669_length_166_cov_0.871795_g179611_i0 PRJDB12578 202669 166 0.871795 1.4471797 Cryptococcus 5206 Fungi Fungi 119 1.35e-22   NTclustered gi|1376263667|ref|XM_569545.2| 214684 g179611 i0 85.841 2.31325301204819 113 14 67 2 55 166 188 299 Cryptococcus neoformans var. neoformans JEC21 chaperone, putative (CNC02520), mRNA blastn 384 119 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus deneoformans
14029566 14029566 PRJDB12578_S_NODE_130572_length_226_cov_1.152542_g107514_i0 PRJDB12578 130572 226 1.152542 2.60474492 Rhodotorula graminis 29898 Fungi Fungi 60.2 1.2e-4   NTclustered gi|1069919989|ref|XM_018415791.1| 578459 g107514 i0 97.143 9 35 1 15 0 18 52 2853 2887 Rhodotorula graminis WP1 uncharacterized protein (RHOBADRAFT_51352), partial mRNA blastn 2034 60.2 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula graminis
15302580 15302580 PRJDB12578_S_NODE_104933_length_277_cov_1.127193_g81875_i0 PRJDB12578 104933 277 1.127193 3.12232461 Trametes versicolor 5325 Fungi Fungi 54.7 0.007   NTclustered gi|636615126|ref|XM_008040507.1| 717944 g81875 i0 100 0.104693140794224 29 0 10 0 237 265 1261 1233 Trametes versicolor FP-101664 SS1 uncharacterized protein (TRAVEDRAFT_167944), partial mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Polyporaceae Trametes Trametes versicolor
17558786 17558786 PRJDB12578_S_NODE_63334_length_604_cov_2.041441_g40709_i0 PRJDB12578 63334 604 2.041441 12.33030364 Eukaryota 2759 Fungi Fungi 58.4 0.001   NTclustered gi|1859735555|gb|MT644873.1| 5217 g40709 i0 100 6.60264900662252 31 0 5 0 574 604 3884 3914 Tremella mesenterica isolate DM1159 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3988 58.4 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Tremellaceae Tremella Tremella mesenterica
17852817 17852817 PRJDB12578_S_NODE_116035_length_251_cov_1.024752_g92977_i0 PRJDB12578 116035 251 1.024752 2.57212752 Clavaria fumosa 264083 Fungi Fungi 54.7 0.006   NTclustered gi|2511645887|emb|OX637807.1| 264083 g92977 i0 96.875 0.254980079681275 32 1 13 0 87 118 251537 251568 Clavaria fumosa genome assembly, organelle: mitochondrion blastn 64 54.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Clavariaceae Clavaria Clavaria fumosa
28548521 28548521 PRJDB12578_S_NODE_132807_length_223_cov_0.896552_g109749_i0 PRJDB12578 132807 223 0.896552 1.99931096 Paxillus ammoniavirescens 1132860 Fungi Fungi 42 0.0254   NR KAF8843422.1 1132860 g109749 i0 25 0.860986547085202 64 48 86.1 0 192 1 70 133 KAF8843422.1 hypothetical protein BDN67DRAFT_964545 [Paxillus ammoniavirescens] diamond 192 42 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Boletales Paxillaceae Paxillus Paxillus ammoniavirescens
30790658 30790658 PRJDB12578_S_NODE_174254_length_182_cov_1.526316_g151196_i0 PRJDB12578 174254 182 1.526316 2.77789512 Austropuccinia psidii 181123 Fungi Fungi 43.9 0.00641   NR MBW0511442.1 1389203 g151196 i0 44.9 0.807692307692308 49 25 77.5 1 27 167 359 407 MBW0511442.1 hypothetical protein [Austropuccinia psidii MF-1] diamond 147 43.9 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Sphaerophragmiaceae Austropuccinia Austropuccinia psidii
31296237 31296237 PRJDB12578_S_NODE_144335_length_209_cov_1.281250_g121277_i0 PRJDB12578 144335 209 1.28125 2.6778125 Sparassis crispa 139825 Fungi Fungi 55.1 1.08e-6   NR XP_027620327.1 139825 g121277 i0 58.5 2.35406698564593 41 17 58.9 0 123 1 1347 1387 XP_027620327.1 hypothetical protein SCP_1600760 [Sparassis crispa] diamond 492 55.1 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Sparassidaceae Sparassis Sparassis crispa
32213783 32213783 PRJDB12578_S_NODE_158758_length_195_cov_1.068493_g135700_i0 PRJDB12578 158758 195 1.068493 2.08356135 Sphaerobolus stellatus SS14 990650 Fungi Fungi 43.1 0.0145   NR KIJ25936.1 990650 g135700 i0 43.9 0.630769230769231 41 23 63.1 0 135 13 278 318 KIJ25936.1 hypothetical protein M422DRAFT_273077 [Sphaerobolus stellatus SS14] diamond 123 43.1 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Geastrales Sphaerobolaceae Sphaerobolus Sphaerobolus stellatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;