RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJDB12578", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJDB12578 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1275278 1275278 PRJDB12578_S_NODE_119462_length_244_cov_1.748718_g96404_i0 PRJDB12578 119462 244 1.748718 4.26687192 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.006   NTclustered gi|123427123|ref|XM_001307185.1| 412133 g96404 i0 100 0.118852459016393 29 0 12 0 58 86 2550 2522 Trichomonas vaginalis G3 immunoglobulins domain-containing protein (TVAGG3_0907770), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
22956112 22956112 PRJDB12578_S_NODE_203499_length_165_cov_1.767241_g180441_i0 PRJDB12578 203499 165 1.767241 2.91594765 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.014   NTclustered gi|2806440002|ref|XM_068490867.1| 1144522 g180441 i0 90.244 0.248484848484848 41 3 24 1 111 150 108 68 Tritrichomonas foetus uncharacterized protein (TRFO_02726), partial mRNA blastn 41 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;