RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJDB12578" and tax_clade = "Metamonada"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJDB12578 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1275278 1275278 PRJDB12578_S_NODE_119462_length_244_cov_1.748718_g96404_i0 PRJDB12578 119462 244 1.748718 4.26687192 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.006   NTclustered gi|123427123|ref|XM_001307185.1| 412133 g96404 i0 100 0.118852459016393 29 0 12 0 58 86 2550 2522 Trichomonas vaginalis G3 immunoglobulins domain-containing protein (TVAGG3_0907770), partial mRNA blastn 29 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
1275656 1275656 PRJDB12578_S_NODE_128682_length_228_cov_2.837989_g105624_i0 PRJDB12578 128682 228 2.837989 6.47061492 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 52.8 0.02   NTclustered gi|2794967074|ref|XM_067868444.1| 2049356 g105624 i0 100 0.12280701754386 28 0 12 0 101 128 4478 4451 Monocercomonoides exilis putative Cleavage and polyadenylation specificity factor subunit 3 (MONOS_15559), partial mRNA blastn 28 52.8 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
22657750 22657750 PRJDB12578_S_NODE_139498_length_214_cov_2.042424_g116440_i0 PRJDB12578 139498 214 2.042424 4.37078736 Paratrimastix 1709327 Preaxostyla other_Eukaryota 134 6.54e-27   NTclustered gi|14348576|gb|AF244904.1|AF244904 137421 g116440 i0 87.826 11.0747663551402 115 13 54 1 100 214 1540 1653 Trimastix pyriformis ATCC50598 small subunit ribosomal RNA gene, complete sequence blastn 2370 134 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis ATCC50598
22956112 22956112 PRJDB12578_S_NODE_203499_length_165_cov_1.767241_g180441_i0 PRJDB12578 203499 165 1.767241 2.91594765 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.8 0.014   NTclustered gi|2806440002|ref|XM_068490867.1| 1144522 g180441 i0 90.244 0.248484848484848 41 3 24 1 111 150 108 68 Tritrichomonas foetus uncharacterized protein (TRFO_02726), partial mRNA blastn 41 52.8 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;