RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJDB12578", tax_clade = "Amoebozoa" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJDB12578 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8633944 8633944 PRJDB12578_S_NODE_217487_length_154_cov_2.942857_g194429_i0 PRJDB12578 217487 154 2.942857 4.53199978 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.004   NTclustered gi|183234349|ref|XM_644357.2| 294381 g194429 i0 100 0.792207792207792 29 0 19 0 64 92 1657 1629 Entamoeba histolytica HM-1:IMSS uncharacterized protein (EHI_188580), partial mRNA blastn 122 54.7 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
12459943 12459943 PRJDB12578_S_NODE_175350_length_181_cov_1.575758_g152292_i0 PRJDB12578 175350 181 1.575758 2.85212198 Entamoeba 5758 Evosea other_Eukaryota 56.5 0.001   NTclustered gi|67484603|ref|XM_652430.1| 294381 g152292 i0 96.97 0.364640883977901 33 1 18 0 56 88 388 420 Entamoeba histolytica HM-1:IMSS serine/threonine-protein kinase, putative (EHI_148200), partial mRNA blastn 66 56.5 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
14029192 14029192 PRJDB12578_S_NODE_121092_length_241_cov_1.880208_g98034_i0 PRJDB12578 121092 241 1.880208 4.53130128 Cavenderia fasciculata 261658 Evosea other_Eukaryota 52.8 0.022   NTclustered gi|470236523|ref|XM_004350165.1| 261658 g98034 i0 100 0.116182572614108 28 0 12 0 209 236 1836 1863 Cavenderia fasciculata RNA-binding region RNP-1 domain-containing protein (DFA_11272), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
14029761 14029761 PRJDB12578_S_NODE_135512_length_219_cov_1.658824_g112454_i0 PRJDB12578 135512 219 1.658824 3.63282456 Dictyostelium discoideum 44689 Evosea other_Eukaryota 54.7 0.005   NTclustered gi|66810102|ref|XM_633683.1| 352472 g112454 i0 100 0.132420091324201 29 0 13 0 9 37 732 760 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0284131) mRNA, complete cds blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
20408517 20408517 PRJDB12578_S_NODE_85277_length_357_cov_2.756494_g62219_i0 PRJDB12578 85277 357 2.756494 9.84068358 Dictyostelium purpureum 5786 Evosea other_Eukaryota 56.5 0.003   NTclustered gi|330793621|ref|XM_003284834.1| 5786 g62219 i0 96.97 0.092436974789916 33 1 9 0 1 33 648 616 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_28377), partial mRNA blastn 33 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
24226959 24226959 PRJDB12578_S_NODE_121340_length_241_cov_1.322917_g98282_i0 PRJDB12578 121340 241 1.322917 3.18822997 Heterostelium album 2086695 Evosea other_Eukaryota 52.8 0.022   NTclustered gi|1160573676|ref|XM_020577016.1| 670386 g98282 i0 100 0.116182572614108 28 0 12 0 92 119 251 278 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
24228109 24228109 PRJDB12578_S_NODE_151440_length_202_cov_1.000000_g128382_i0 PRJDB12578 151440 202 1 2.02 Rhizomastix vacuolata 1745346 Evosea other_Eukaryota 67.6 6.28e-7   NTclustered gi|944556491|gb|KP343626.1| 1745346 g128382 i0 91.667 0.95049504950495 48 4 24 0 10 57 329 282 Rhizomastix vacuolata strain GOL1 clone 2 small subunit ribosomal RNA gene, partial sequence blastn 192 67.6 1 Eukaryota Amoebozoa   Evosea       Rhizomastix Rhizomastix vacuolata
32750694 32750694 PRJDB12578_S_NODE_123900_length_236_cov_1.663102_g100842_i0 PRJDB12578 123900 236 1.663102 3.92492072 Heterostelium album PN5 2086695 Evosea other_Eukaryota 42.4 0.0464   NR XP_020427930.1 670386 g100842 i0 52.8 0.457627118644068 36 17 45.8 0 208 101 54 89 XP_020427930.1 hypothetical protein PPL_10851 [Heterostelium album PN500] diamond 108 42.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;