RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJDB12134" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB12134 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1274224 1274224 PRJDB12134_P_NODE_10942_length_274_cov_2.572139_g10807_i0 PRJDB12134 10942 274 2.572139 7.04766086 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 281 2.95e-71   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g10807 i0 85.714 4.71897810218978 266 38 97 0 1 266 3216294 3216559 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 1293 281 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
6083794 6083794 PRJDB12134_P_NODE_10925_length_275_cov_1.435644_g10790_i0 PRJDB12134 10925 275 1.435644 3.948021 Prosthecobacter 48463 Bacteria Bacteria 331 2.9000000000000006e-86   NTclustered gi|183579826|emb|AM905423.1| 48465 g10790 i0 89.051 282.025454545455 274 20 99 5 1 274 1507 1770 Prosthecobacter dejongeii partial 23S rRNA gene, strain DSM12251 blastn 77557 331 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii
7652303 7652303 PRJDB12134_P_NODE_13047_length_249_cov_0.886364_g12912_i0 PRJDB12134 13047 249 0.886364 2.20704636 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 104 6.4899999999999996e-24   NR MCX6953688.1 2026799 g12912 i0 67.5 3 83 27 100 0 1 249 998 1080 MCX6953688.1 PAS domain S-box protein [Verrucomicrobiota bacterium] diamond 747 104 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29558565 29558565 PRJDB12134_P_NODE_13390_length_247_cov_0.896552_g13255_i0 PRJDB12134 13390 247 0.896552 2.21448344 Opitutaceae bacterium 2006848 Bacteria Bacteria 115 1e-27   NR HEY0968270.1 2006848 g13255 i0 71.8 1.03238866396761 85 21 99.6 1 2 247 136 220 HEY0968270.1 penicillin acylase family protein [Opitutaceae bacterium] diamond 255 115 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;