RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJDB12134" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJDB12134 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17851927 17851927 PRJDB12134_P_NODE_12795_length_250_cov_0.881356_g12660_i0 PRJDB12134 12795 250 0.881356 2.20339 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 152 6.14e-42   NR HJQ21209.1 2026741 g12660 i0 89.2 3.984 83 9 99.6 0 1 249 107 189 HJQ21209.1 UDP-glucose/GDP-mannose dehydrogenase family protein [Gemmatimonadaceae bacterium] diamond 996 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26900058 26900058 PRJDB12134_P_NODE_12401_length_252_cov_0.871508_g12266_i0 PRJDB12134 12401 252 0.871508 2.19620016 Gemmatimonadaceae 219687 Bacteria Bacteria 110 2.0500000000000003e-27   NR WP_025411944.1 861299 g12266 i0 75.9 1.97619047619048 83 16 98.8 1 3 251 181 259 WP_025411944.1 peptide chain release factor N(5)-glutamine methyltransferase [Gemmatirosa kalamazoonensis] diamond 498 111 0.990990990990991 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
27126760 27126760 PRJDB12134_P_NODE_5962_length_423_cov_1.205714_g5828_i0 PRJDB12134 5962 423 1.205714 5.10017022 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.7 0.0403   NR HCU11550.1 2026742 g5828 i0 35.1 0.524822695035461 74 45 50.4 1 36 248 19 92 HCU11550.1 hypothetical protein [Gemmatimonadota bacterium] diamond 222 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;