RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJDB12134", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJDB12134 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2549991 2549991 PRJDB12134_P_NODE_2823_length_666_cov_2.089376_g2698_i0 PRJDB12134 2823 666 2.089376 13.91524416 Anaeromyxobacter sp. Fw109-5 404589 Bacteria Bacteria 233 2.2099999999999997e-56   NTclustered gi|152026452|gb|CP000769.1| 404589 g2698 i0 79.641 4.75525525525526 334 60 50 7 1 330 3810930 3810601 Anaeromyxobacter sp. Fw109-5, complete genome blastn 3167 233 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. Fw109-5
12753611 12753611 PRJDB12134_P_NODE_3311_length_611_cov_1.752788_g3182_i0 PRJDB12134 3311 611 1.752788 10.70953468 Cystobacter fuscus 43 Bacteria Bacteria 586 1.3399999999999995e-162   NTclustered gi|1243034522|gb|CP022098.1| 43 g3182 i0 89.588 71.7839607201309 461 48 75 0 3 463 8623845 8623385 Cystobacter fuscus strain DSM 52655 chromosome, complete genome blastn 43860 586 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
24225886 24225886 PRJDB12134_P_NODE_13540_length_246_cov_1.803468_g13405_i0 PRJDB12134 13540 246 1.803468 4.43653128 Corallococcus interemptor 2316720 Bacteria Bacteria 344 3.27e-90   NTclustered gi|2809283937|gb|CP102579.1| 2316720 g13405 i0 91.87 96.1951219512195 246 20 100 0 1 246 2013463 2013218 Corallococcus interemptor strain YZPH-2 chromosome, complete genome blastn 23664 344 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus interemptor
27506556 27506556 PRJDB12134_P_NODE_13203_length_248_cov_0.891429_g13068_i0 PRJDB12134 13203 248 0.891429 2.21074392 Sandaracinaceae bacterium 2510337 Bacteria Bacteria 54.7 1.7e-6   NR MCC6874568.1 2510337 g13068 i0 59.5 1.4758064516129 42 17 50.8 0 2 127 201 242 MCC6874568.1 CBS domain-containing protein [Sandaracinaceae bacterium] diamond 366 54.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium
31169565 31169565 PRJDB12134_P_NODE_14115_length_243_cov_0.917647_g13980_i0 PRJDB12134 14115 243 0.917647 2.22988221 Byssovorax sp. 2927945 Bacteria Bacteria 71.6 2.42e-12   NR MFO0760762.1 2927945 g13980 i0 57.1 0.950617283950617 77 33 95.1 0 241 11 523 599 MFO0760762.1 VWA domain-containing protein [Byssovorax sp.] diamond 231 71.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Byssovorax Byssovorax sp.
31802174 31802174 PRJDB12134_P_NODE_14217_length_243_cov_0.900000_g14082_i0 PRJDB12134 14217 243 0.9 2.187 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 147 1.1e-41   NR MBI2388921.1 2026735 g14082 i0 90.1 1 81 8 100 0 1 243 49 129 MBI2388921.1 tetratricopeptide repeat protein [Deltaproteobacteria bacterium] diamond 243 147 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;