RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJDB12134" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJDB12134 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2255868 2255868 PRJDB12134_P_NODE_12162_length_255_cov_1.318681_g12027_i0 PRJDB12134 12162 255 1.318681 3.36263655 Trebouxiophyceae 75966 Plants Plants 374 4.3499999999999996e-99   NTclustered gi|371782094|emb|HE610126.1| 33092 g12027 i0 93.359 100.235294117647 256 12 100 5 1 255 4532 4281 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 25560 374 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
9908815 9908815 PRJDB12134_P_NODE_9148_length_307_cov_1.320513_g9013_i0 PRJDB12134 9148 307 1.320513 4.05397491 Myrmecia 13617 Plants Plants 568 2.3e-157   NTclustered gi|871410|emb|Z47208.1| 41461 g9013 i0 100 99.9348534201954 307 0 100 0 1 307 656 962 M.astigmatica gene for 18S ribosomal RNA (small subunit) blastn 30680 568 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia astigmatica
10202906 10202906 PRJDB12134_P_NODE_12909_length_249_cov_2.784091_g12774_i0 PRJDB12134 12909 249 2.784091 6.93238659 chlorobiont of Psora decipiens 1938899 Plants Plants 460 3.16e-125   NTclustered gi|1158556132|emb|LT717572.1| 1938899 g12774 i0 100 86.3012048192771 249 0 100 0 1 249 273 25 Chlorobiont of Psora decipiens partial 26S rRNA gene, isolate Swe2-Aus blastn 21489 460 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       chlorobiont of Psora decipiens
12459811 12459811 PRJDB12134_P_NODE_6830_length_384_cov_1.655949_g6695_i0 PRJDB12134 6830 384 1.655949 6.35884416 Chlorella 3071 Plants Plants 521 2.3199999999999992e-143   NTclustered gi|77627727|dbj|AB237642.1| 3077 g6695 i0 91.214 101.028645833333 387 29 100 5 1 384 1783 2167 Chlorella vulgaris NIES:227 gene for 28S ribosomal RNA, partial sequence blastn 38795 521 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;