RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJDB12134", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJDB12134 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10202910 10202910 PRJDB12134_P_NODE_13149_length_248_cov_1.748571_g13014_i0 PRJDB12134 13149 248 1.748571 4.33645608 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 162 8.36e-48   NR MDX1421393.1 2838334 g13014 i0 90.2 0.991935483870968 82 8 99.2 0 247 2 5 86 MDX1421393.1 IS5 family transposase [Rubricoccaceae bacterium] diamond 246 162 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
30917242 30917242 PRJDB12134_P_NODE_10674_length_279_cov_1.373786_g10539_i0 PRJDB12134 10674 279 1.373786 3.83286294 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 75.9 4.73e-14   NR HEX8384657.1 2838334 g10539 i0 62.7 0.634408602150538 59 21 63.4 1 179 3 3 60 HEX8384657.1 alpha/beta hydrolase [Rubricoccaceae bacterium] diamond 177 75.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;