RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond" and tax_phylum = "Prasinodermophyta"

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bioproject 3

tax_superkingdom 1

tax_phylum 1

  • Prasinodermophyta · 6 ✖

tax_kingdom 1

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
127335 127335 PRJEB64798_P_NODE_169541_length_179_cov_2.061538_g167775_i0 PRJEB64798 169541 179 2.061538 3.69015302 Palmophyllum crassum 1615899 Plants Plants 89.7 4.39e-19   NR YP_009340876.1 1615899 g167775 i0 69 0.972067039106145 58 18 97.2 0 174 1 601 658 YP_009340876.1 photosystem I P700 chlorophyll a apoprotein A1 [Palmophyllum crassum] diamond 174 89.7 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Palmophyllales Palmophyllaceae Palmophyllum Palmophyllum crassum
28894301 28894301 PRJNA758398_S_NODE_32288_length_188_cov_1.230216_g32147_i0 PRJNA758398 32288 188 1.230216 2.31280608 Viridiplantae 33090 Plants Plants 80.1 1.19e-15   NR QGN73941.1 110672 g32147 i0 86 11.6648936170213 43 6 68.6 0 130 2 43 85 QGN73941.1 ATP synthase F1 subunit alpha [Prasinococcus sp. CCMP1194] diamond 2193 80.1 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus sp. CCMP1194
29805639 29805639 PRJEB64798_P_NODE_184991_length_172_cov_4.821138_g183225_i0 PRJEB64798 184991 172 4.821138 8.29235736 Viridiplantae 33090 Plants Plants 84.3 2.02e-17   NR QGN73963.1 110672 g183225 i0 72.7 37.3779069767442 55 15 95.9 0 6 170 33 87 QGN73963.1 apocytochrome b [Prasinococcus sp. CCMP1194] diamond 6429 85.1 0.990599294947121 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus sp. CCMP1194
33078212 33078212 PRJNA737474f_S_NODE_174125_length_258_cov_1.286486_g173447_i0 PRJNA737474 174125 258 1.286486 3.31913388 Eukaryota 2759 Plants Plants 65.1 5.81e-10   NR QGN73945.1 110672 g173447 i0 54.4 11.2674418604651 57 26 66.3 0 2 172 135 191 QGN73945.1 NADH dehydrogenase subunit 4 [Prasinococcus sp. CCMP1194] diamond 2907 65.5 0.993893129770992 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus sp. CCMP1194
33108832 33108832 PRJNA737474g_S_NODE_80678_length_348_cov_2.949091_g79384_i0 PRJNA737474 80678 348 2.949091 10.26283668 Prasinococcus sp. CCMP1194 110672 Plants Plants 75.5 3.97e-13   NR QGN73945.1 110672 g79384 i0 54.4 3.51724137931034 68 31 58.6 0 49 252 124 191 QGN73945.1 NADH dehydrogenase subunit 4 [Prasinococcus sp. CCMP1194] diamond 1224 75.5 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus sp. CCMP1194
33159886 33159886 PRJNA737474g_S_NODE_71296_length_362_cov_2.339100_g70002_i0 PRJNA737474 71296 362 2.3391 8.467542 Prasinococcus sp. CCMP1194 110672 Plants Plants 75.1 6.22e-13   NR QGN73945.1 110672 g70002 i0 54.4 3.38121546961326 68 31 56.4 0 51 254 124 191 QGN73945.1 NADH dehydrogenase subunit 4 [Prasinococcus sp. CCMP1194] diamond 1224 75.1 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus sp. CCMP1194

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;