RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond" and tax_phylum = "Candidatus Gribaldobacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Gribaldobacteria · 6 ✖

tax_clade 1

analysis 1

  • diamond · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26849688 26849688 PRJNA1148190_P_NODE_327641_length_309_cov_1.038136_g316468_i0 PRJNA1148190 327641 309 1.038136 3.20784024 bacterium (Candidatus Gribaldobacteria) CG_4_1 2798521 Bacteria Bacteria 75.1 3.59e-13   NR PIZ00993.1 2014266 g316468 i0 55.2 0.650485436893204 67 29 64.1 1 112 309 188 254 PIZ00993.1 MAG: hypothetical protein COY61_01015 [bacterium (Candidatus Gribaldobacteria) CG_4_10_14_0_8_um_filter_33_9] diamond 201 75.1 1 Bacteria Bacteria candidate phyla   Candidatus Gribaldobacteria         bacterium (Candidatus Gribaldobacteria) CG_4_10_14_0_8_um_filter_33_9
29344986 29344986 PRJNA1148190_P_NODE_472529_length_272_cov_1.266332_g461356_i0 PRJNA1148190 472529 272 1.266332 3.44442304 bacterium (Candidatus Gribaldobacteria) CG23_combo_of_CG 2798521 Bacteria Bacteria 102 4.169999999999999e-23   NR PIP32046.1 2014278 g461356 i0 64 1.78676470588235 86 27 90.4 2 27 272 172 257 PIP32046.1 MAG: magnesium chelatase [bacterium (Candidatus Gribaldobacteria) CG23_combo_of_CG06-09_8_20_14_all_37_87_8] diamond 486 102 1 Bacteria Bacteria candidate phyla   Candidatus Gribaldobacteria         bacterium (Candidatus Gribaldobacteria) CG23_combo_of_CG06-09_8_20_14_all_37_87_8
29963229 29963229 PRJNA983848_P_NODE_137991_length_253_cov_0.866667_g132108_i0 PRJNA983848 137991 253 0.866667 2.19266751 bacterium (Candidatus Gribaldobacteria) CG_4_1 2798521 Bacteria Bacteria 47.4 8.58e-4   NR PIZ01041.1 2014266 g132108 i0 50 1.04347826086957 44 22 52.2 0 239 108 98 141 PIZ01041.1 MAG: 30S ribosomal protein S1 [bacterium (Candidatus Gribaldobacteria) CG_4_10_14_0_8_um_filter_33_9] diamond 264 47.4 1 Bacteria Bacteria candidate phyla   Candidatus Gribaldobacteria         bacterium (Candidatus Gribaldobacteria) CG_4_10_14_0_8_um_filter_33_9
30349391 30349391 PRJEB11748_P_NODE_259032_length_241_cov_5.372222_g256849_i0 PRJEB11748 259032 241 5.372222 12.94705502 bacterium (Candidatus Gribaldobacteria) CG_4_8_14_3_um_filter_42_11 2014267 Bacteria Bacteria 84 1.15e-16   NR PIX02982.1 2014267 g256849 i0 65.6 0.759336099585062 61 21 75.9 0 29 211 802 862 PIX02982.1 MAG: hypothetical protein COZ78_02805 [bacterium (Candidatus Gribaldobacteria) CG_4_8_14_3_um_filter_42_11] diamond 183 84 1 Bacteria Bacteria candidate phyla   Candidatus Gribaldobacteria         bacterium (Candidatus Gribaldobacteria) CG_4_8_14_3_um_filter_42_11
30791718 30791718 PRJEB41113_S_NODE_7334_length_172_cov_4.303704_g7325_i0 PRJEB41113 7334 172 4.303704 7.40237088 bacterium (Candidatus Gribaldobacteria) CG_4_1 2798521 Bacteria Bacteria 61.2 1.25e-10   NR PJA01995.1 2014264 g7325 i0 63 0.802325581395349 46 16 80.2 1 3 140 29 73 PJA01995.1 MAG: hypothetical protein COX73_03085 [bacterium (Candidatus Gribaldobacteria) CG_4_10_14_0_2_um_filter_36_18] diamond 138 61.2 1 Bacteria Bacteria candidate phyla   Candidatus Gribaldobacteria         bacterium (Candidatus Gribaldobacteria) CG_4_10_14_0_2_um_filter_36_18
32397889 32397889 PRJEB10140_P_NODE_193699_length_200_cov_1.721854_g176390_i0 PRJEB10140 193699 200 1.721854 3.443708 Bacteria 2 Bacteria Bacteria 111 1.93e-27   NR PIU15117.1 2014273 g176390 i0 74.6 7.965 59 15 88.5 0 199 23 179 237 PIU15117.1 MAG: site-specific DNA-methyltransferase [bacterium (Candidatus Gribaldobacteria) CG08_land_8_20_14_0_20_39_15] diamond 1593 112 0.991071428571429 Bacteria Bacteria candidate phyla   Candidatus Gribaldobacteria         bacterium (Candidatus Gribaldobacteria) CG08_land_8_20_14_0_20_39_15

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;