RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond" and tax_clade = "marine Actinobacteria clade"

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bioproject 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • marine Actinobacteria clade · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27770721 27770721 PRJNA414036_P_NODE_18244_length_351_cov_422.509494_g16530_i0 PRJNA414036 18244 351 422.509494 1483.00832394 uncultured actinobacterium HF 152507 Bacteria Bacteria 57.4 3.29e-7   NR ADI22944.1 723604 g16530 i0 40.4 1.1965811965812 94 55 79.5 1 45 323 85 178 ADI22944.1 hypothetical protein [uncultured actinobacterium HF0500_35G12] diamond 420 57.4 1 Bacteria marine Actinobacteria clade Bacillati Actinomycetota Actinomycetes       uncultured actinobacterium HF0500_35G12
32653132 32653132 PRJNA550047_P_NODE_236480_length_301_cov_3.135965_g234511_i0 PRJNA550047 236480 301 3.135965 9.43925465 Bacillati 1783272 Bacteria Bacteria 54.7 2.26e-6   NR AKQ04440.1 1665149 g234511 i0 49.1 3.97674418604651 55 28 54.8 0 297 133 102 156 AKQ04440.1 30S ribosomal protein S4, small subunit ribosomal protein S4 [uncultured actinobacterium Rifle_16ft_4_minimus_550] diamond 1197 54.7 1 Bacteria marine Actinobacteria clade Bacillati Actinomycetota Actinomycetes       uncultured actinobacterium Rifle_16ft_4_minimus_550

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;