RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", tax_clade = "OCS116 cluster" and tax_phylum = "Pseudomonadota"

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bioproject 3

tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • OCS116 cluster · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28946608 28946608 PRJNA704949_P_NODE_1880488_length_172_cov_1.268293_g1865149_i0 PRJNA704949 1880488 172 1.268293 2.18146396 OCS116 cluster bacterium 2030921 Bacteria Bacteria 44.7 0.00302   NR MBL1241830.1 2030921 g1865149 i0 47.4 0.662790697674419 38 20 66.3 0 139 26 336 373 MBL1241830.1 hypothetical protein [OCS116 cluster bacterium] diamond 114 44.7 1 Bacteria OCS116 cluster Pseudomonadati Pseudomonadota Alphaproteobacteria       OCS116 cluster bacterium
29058386 29058386 PRJNA1120060_P_NODE_2021988_length_272_cov_1.266332_g2003955_i0 PRJNA1120060 2021988 272 1.266332 3.44442304 OCS116 cluster bacterium 2030921 Bacteria Bacteria 42.7 0.0492   NR MBL1242500.1 2030921 g2003955 i0 29.3 0.827205882352941 75 40 71.7 2 263 69 217 288 MBL1242500.1 iron chelate uptake ABC transporter family permease subunit [OCS116 cluster bacterium] diamond 225 42.7 1 Bacteria OCS116 cluster Pseudomonadati Pseudomonadota Alphaproteobacteria       OCS116 cluster bacterium
29128690 29128690 PRJNA432257_S_NODE_25909_length_294_cov_8.957198_g25528_i0 PRJNA432257 25909 294 8.957198 26.33416212 OCS116 cluster bacterium 2030921 Bacteria Bacteria 131 1.08e-36   NR MBL1240265.1 2030921 g25528 i0 67.5 1.69387755102041 83 27 84.7 0 14 262 3 85 MBL1240265.1 cupin domain-containing protein [OCS116 cluster bacterium] diamond 498 131 1 Bacteria OCS116 cluster Pseudomonadati Pseudomonadota Alphaproteobacteria       OCS116 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;