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contig_metadata

13 rows where analysis = "diamond" and tax_clade = "Human endogenous retroviruses"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human endogenous retroviruses · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22640150 22640150 PRJNA981359_S_NODE_60618_length_260_cov_1.374332_g60518_i0 PRJNA981359 60618 260 1.374332 3.5732632 Human endogenous retrovirus K 45617 Viruses Viruses 54.3 3.91e-6   NR CAA76882.1 45617 g60518 i0 61.4 5.58461538461538 44 17 50.8 0 128 259 571 614 CAA76882.1 pol protein [Human endogenous retrovirus K] diamond 1452 54.3 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K
27279253 27279253 PRJNA981359_S_NODE_46163_length_289_cov_0.842593_g46063_i0 PRJNA981359 46163 289 0.842593 2.43509377 Human endogenous retrovirus K 45617 Viruses Viruses 88.6 2.64e-19   NR ABA28250.1 45617 g46063 i0 52.9 5.26297577854671 85 40 88.2 0 257 3 101 185 ABA28250.1 protease, partial [Human endogenous retrovirus K] diamond 1521 88.6 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K
27294830 27294830 PRJNA1241156_S_NODE_48243_length_280_cov_4.987342_g47783_i0 PRJNA1241156 48243 280 4.987342 13.9645576 Human endogenous retrovirus K 45617 Viruses Viruses 70.5 1.04e-11   NR CAA76882.1 45617 g47783 i0 49.3 4.82142857142857 75 38 80.4 0 235 11 199 273 CAA76882.1 pol protein [Human endogenous retrovirus K] diamond 1350 71.2 0.990168539325843 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K
27595171 27595171 PRJNA982720_S_NODE_9184_length_247_cov_0.839080_g9156_i0 PRJNA982720 9184 247 0.83908 2.0725276 Human endogenous retrovirus K 45617 Viruses Viruses 106 2.07e-26   NR ABA28250.1 45617 g9156 i0 63 3.93522267206478 81 30 98.4 0 244 2 101 181 ABA28250.1 protease, partial [Human endogenous retrovirus K] diamond 972 106 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K
27749872 27749872 PRJNA835051_S_NODE_82364_length_183_cov_0.792857_g82068_i0 PRJNA835051 82364 183 0.792857 1.45092831 Multiple sclerosis associated retrovirus 62805 Viruses Viruses 59.3 2.44e-8   NR AAB66528.1 62805 g82068 i0 59.6 0.852459016393443 52 21 85.2 0 25 180 81 132 AAB66528.1 polyprotein, partial [Multiple sclerosis associated retrovirus] diamond 156 59.3 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus W
28037155 28037155 PRJNA981359_S_NODE_20425_length_359_cov_0.727273_g20325_i0 PRJNA981359 20425 359 0.727273 2.61091007 HERV-H/env6 57282 Viruses Viruses 78.6 3.8e-14   NR CAB94193.2 129526 g20325 i0 43.7 0.994428969359331 119 67 99.4 0 357 1 366 484 CAB94193.2 envelope protein [HERV-H/env60] diamond 357 78.6 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus H
28515968 28515968 PRJNA835051_S_NODE_24467_length_263_cov_2.372727_g24171_i0 PRJNA835051 24467 263 2.372727 6.24027201 root 1 Root_unresolved Root_unresolved 70.9 6.04e-12   NR CAA76882.1 45617 g24171 i0 39.1 5.97718631178707 87 53 99.2 0 261 1 329 415 CAA76882.1 pol protein [Human endogenous retrovirus K] diamond 1572 70.9 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K
29286593 29286593 PRJNA473799_P_NODE_35309_length_251_cov_0.865169_g35035_i0 PRJNA473799 35309 251 0.865169 2.17157419 Multiple sclerosis associated retrovirus element 89382 Viruses Viruses 47 1.33e-4   NR AAD48372.1 89382 g35035 i0 46 0.597609561752988 50 27 59.8 0 159 10 1 50 AAD48372.1 unknown protein U5/1 [Multiple sclerosis associated retrovirus element] diamond 150 47 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus W
29300022 29300022 PRJNA981359_S_NODE_70229_length_246_cov_0.867052_g70129_i0 PRJNA981359 70229 246 0.867052 2.13294792 Human endogenous retrovirus K 45617 Viruses Viruses 75.5 1.01e-13   NR CAA71418.1 45617 g70129 i0 66.7 7.68292682926829 63 21 76.8 0 206 18 224 286 CAA71418.1 gag protein, partial [Human endogenous retrovirus K] diamond 1890 75.5 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K
29442404 29442404 PRJNA312615_P_NODE_32490_length_215_cov_0.861446_g32339_i0 PRJNA312615 32490 215 0.861446 1.8521089 Multiple sclerosis associated retrovirus element 89382 Viruses Viruses 41.6 0.00877   NR AAD48373.1 89382 g32339 i0 55.9 0.474418604651163 34 15 47.4 0 102 1 14 47 AAD48373.1 unknown protein U5/2 [Multiple sclerosis associated retrovirus element] diamond 102 41.6 1 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus W
30057779 30057779 PRJNA981359_S_NODE_58631_length_264_cov_0.816754_g58531_i0 PRJNA981359 58631 264 0.816754 2.15623056 Human endogenous retrovirus HCML-ARV 228277 Viruses Viruses 90.5 7.99e-19   NR AAP06677.1 228277 g58531 i0 59.7 2.61363636363636 77 31 87.5 0 264 34 25 101 AAP06677.1 pol protein [Human endogenous retrovirus HCML-ARV] diamond 690 91.3 0.991237677984666 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus
31284102 31284102 PRJNA706190_P_NODE_36575_length_182_cov_0.992481_g36439_i0 PRJNA706190 36575 182 0.992481 1.80631542 Human endogenous retrovirus K 45617 Viruses Viruses 72.4 1.11e-13   NR ABA28250.1 45617 g36439 i0 53.3 6.90659340659341 60 28 98.9 0 3 182 52 111 ABA28250.1 protease, partial [Human endogenous retrovirus K] diamond 1257 72.8 0.994505494505495 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus K
31382602 31382602 PRJNA879221_P_NODE_54156_length_247_cov_0.885057_g54016_i0 PRJNA879221 54156 247 0.885057 2.18609079 Multiple sclerosis associated retrovirus 62805 Viruses Viruses 49.3 1.87e-4   NR AAB66528.1 62805 g54016 i0 61.5 0.983805668016194 39 15 47.4 0 239 123 299 337 AAB66528.1 polyprotein, partial [Multiple sclerosis associated retrovirus] diamond 243 49.7 0.991951710261569 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus W

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;