RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA999747" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA999747 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26804919 26804919 PRJNA999747_S_NODE_761_length_325_cov_2.380952_g729_i0 PRJNA999747 761 325 2.380952 7.738094 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 99 2.75e-22   NR XP_004352561.1 1257118 g729 i0 46.2 1.94769230769231 104 55 96 1 323 12 171 273 XP_004352561.1 EF hand domain containing protein [Acanthamoeba castellanii str. Neff] diamond 633 99 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27974133 27974133 PRJNA999747_S_NODE_1645_length_235_cov_1.700980_g1613_i0 PRJNA999747 1645 235 1.70098 3.997303 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.1 4.57e-20   NR XP_004333780.1 1257118 g1613 i0 50.6 1.96595744680851 77 38 98.3 0 5 235 75 151 XP_004333780.1 EF hand domain containing protein [Acanthamoeba castellanii str. Neff] diamond 462 90.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28005914 28005914 PRJNA999747_S_NODE_2365_length_200_cov_2.704142_g2333_i0 PRJNA999747 2365 200 2.704142 5.408284 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 75.5 2.81e-15   NR XP_004338635.1 1257118 g2333 i0 62.3 1.8 61 23 91.5 0 9 191 75 135 XP_004338635.1 60S ribosomal protein L36, putative [Acanthamoeba castellanii str. Neff] diamond 360 75.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28005915 28005915 PRJNA999747_S_NODE_3845_length_161_cov_2.338462_g3813_i0 PRJNA999747 3845 161 2.338462 3.76492382 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42.7 0.0122   NR XP_004352561.1 1257118 g3813 i0 47.2 0.670807453416149 36 19 67.1 0 52 159 142 177 XP_004352561.1 EF hand domain containing protein [Acanthamoeba castellanii str. Neff] diamond 108 42.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;