RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA999747" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA999747 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20107159 20107159 PRJNA999747_S_NODE_896_length_305_cov_3.306569_g864_i0 PRJNA999747 896 305 3.306569 10.08503545 Borealophlyctis nickersoniae 2735257 Fungi Fungi 164 2.8199999999999996e-45   NR KAJ3300505.1 2735257 g864 i0 77 20.4 100 23 98.4 0 6 305 14 113 KAJ3300505.1 70-kilodalton heat shock protein [Borealophlyctis nickersoniae] diamond 6222 164 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Borealophlyctidaceae Borealophlyctis Borealophlyctis nickersoniae
21382755 21382755 PRJNA999747_S_NODE_397_length_411_cov_4.294737_g365_i0 PRJNA999747 397 411 4.294737 17.65136907 Chytridiomycetes 451435 Fungi Fungi 168 1.03e-50   NR KAJ3354468.1 109932 g365 i0 71.9 31.9416058394161 121 32 88.3 1 44 406 7 125 KAJ3354468.1 Histone H2A type 1-C [Entophlyctis luteolus] diamond 13128 169 0.994082840236686 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis luteolus
31163671 31163671 PRJNA999747_S_NODE_3695_length_164_cov_2.601504_g3663_i0 PRJNA999747 3695 164 2.601504 4.26646656 Rhizophlyctis rosea 64517 Fungi Fungi 58.9 2.47e-8   NR KAJ3043537.1 64517 g3663 i0 58.5 1.9390243902439 53 22 97 0 160 2 409 461 KAJ3043537.1 hypothetical protein HK097_001731 [Rhizophlyctis rosea] diamond 318 58.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;