RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA999747" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA999747 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27885213 27885213 PRJNA999747_S_NODE_2085_length_211_cov_3.000000_g2053_i0 PRJNA999747 2085 211 3 6.33 Eukaryota 2759 Plants Plants 107 2.67e-27   NR XP_011399104.1 3075 g2053 i0 77.3 26.5876777251185 66 15 93.8 0 208 11 112 177 XP_011399104.1 40S ribosomal protein S9-1 [Auxenochlorella protothecoides] diamond 5610 107 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
28037385 28037385 PRJNA999747_S_NODE_1685_length_232_cov_2.477612_g1653_i0 PRJNA999747 1685 232 2.477612 5.74805984 Picochlorum sp. BPE23 2696299 Plants Plants 58.2 1.19e-7   NR KAI8114302.1 2696299 g1653 i0 41.6 1.99137931034483 77 43 98.3 2 4 231 337 412 KAI8114302.1 hypothetical protein M9434_002428 [Picochlorum sp. BPE23] diamond 462 58.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
29489532 29489532 PRJNA999747_S_NODE_250_length_481_cov_4.846667_g223_i0 PRJNA999747 250 481 4.846667 23.31246827 Picochlorum sp. BPE23 2696299 Plants Plants 168 2.25e-46   NR KAI8107738.1 2696299 g223 i0 57.9 1.65280665280665 133 55 83 1 82 480 2 133 KAI8107738.1 hypothetical protein M9435_002766 [Picochlorum sp. BPE23] diamond 795 168 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;