RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA999747" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA999747 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6083785 6083785 PRJNA999747_S_NODE_585_length_355_cov_2.435185_g553_i0 PRJNA999747 585 355 2.435185 8.64490675 Lactovum miscens 190387 Bacteria Bacteria 220 8.96e-71   NR WP_331035919.1 190387 g553 i0 96.4 0.938028169014084 111 4 93.8 0 6 338 96 206 WP_331035919.1 SGNH/GDSL hydrolase family protein [Lactovum miscens] diamond 333 220 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactovum Lactovum miscens
28479365 28479365 PRJNA999747_S_NODE_3746_length_163_cov_2.560606_g3714_i0 PRJNA999747 3746 163 2.560606 4.17378778 Lactovum miscens 190387 Bacteria Bacteria 116 2.24e-31   NR WP_414672544.1 190387 g3714 i0 100 0.975460122699387 53 0 97.5 0 5 163 21 73 WP_414672544.1 SGNH/GDSL hydrolase family protein [Lactovum miscens] diamond 159 116 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Lactovum Lactovum miscens
29205719 29205719 PRJNA999747_S_NODE_4509_length_150_cov_4.470588_g4477_i0 PRJNA999747 4509 150 4.470588 6.705882 Evansella halocellulosilytica 2011013 Bacteria Bacteria 41.6 0.0267   NR WP_218839267.1 2011013 g4477 i0 42.5 0.8 40 23 80 0 143 24 397 436 WP_218839267.1 glycosyl hydrolase family 18 protein [Evansella halocellulosilytica] diamond 120 41.6 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Evansella Evansella halocellulosilytica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;