RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA999747" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA999747 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27058154 27058154 PRJNA999747_S_NODE_442_length_395_cov_5.461538_g410_i0 PRJNA999747 442 395 5.461538 21.5730751 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 105 4.87e-26   NR KAJ5077557.1 1746090 g410 i0 52.1 0.713924050632911 94 44 71.4 1 27 308 50 142 KAJ5077557.1 duf614 family protein-related [Anaeramoeba ignava] diamond 282 105 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
28479364 28479364 PRJNA999747_S_NODE_2806_length_186_cov_1.619355_g2774_i0 PRJNA999747 2806 186 1.619355 3.0120003 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 70.1 3.85e-12   NR KAJ3450660.1 1746091 g2774 i0 66 1.67741935483871 50 17 80.6 0 178 29 567 616 KAJ3450660.1 plastin-3 [Anaeramoeba flamelloides] diamond 312 70.1 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;