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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA999043" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA999043 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3530478 3530478 PRJNA999043_P_NODE_23463_length_245_cov_0.895349_g23368_i0 PRJNA999043 23463 245 0.895349 2.19360505 Alectoris rufa 9079 Chordata Chordata 86.7 1.54e-19   NR CAK6566519.1 9079 g23368 i0 75 2.08163265306122 56 14 68.6 0 74 241 80 135 CAK6566519.1 unnamed protein product [Alectoris rufa] diamond 510 86.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
8632982 8632982 PRJNA999043_P_NODE_24087_length_243_cov_0.905882_g23992_i0 PRJNA999043 24087 243 0.905882 2.20129326 Alectoris rufa 9079 Chordata Chordata 86.3 7.91e-19   NR CAK6566476.1 9079 g23992 i0 61.1 0.888888888888889 72 28 88.9 0 15 230 80 151 CAK6566476.1 unnamed protein product [Alectoris rufa] diamond 216 86.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
15007700 15007700 PRJNA999043_P_NODE_23172_length_246_cov_0.890173_g23077_i0 PRJNA999043 23172 246 0.890173 2.18982558 Alectoris rufa 9079 Chordata Chordata 65.9 1.04e-10   NR CAK6571032.1 9079 g23077 i0 49.2 0.74390243902439 61 31 74.4 0 197 15 164 224 CAK6571032.1 unnamed protein product [Alectoris rufa] diamond 183 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
26684042 26684042 PRJNA999043_P_NODE_24381_length_242_cov_0.911243_g24286_i0 PRJNA999043 24381 242 0.911243 2.20520806 Phasianidae 9005 Chordata Chordata 82 2.91e-16   NR AQM51742.1 9043 g24286 i0 72.4 5.03305785123967 58 16 71.9 0 174 1 85 142 AQM51742.1 NADH dehydrogenase subunit 2 [Lophura edwardsi] diamond 1218 82.8 0.990338164251208 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Lophura Lophura edwardsi
26709618 26709618 PRJNA999043_P_NODE_23261_length_246_cov_0.890173_g23166_i0 PRJNA999043 23261 246 0.890173 2.18982558 Meleagris gallopavo 9103 Chordata Chordata 43.1 0.0264   NR XP_031409115.1 9103 g23166 i0 45.3 0.646341463414634 53 29 64.6 0 62 220 265 317 XP_031409115.1 protein mono-ADP-ribosyltransferase PARP14-like [Meleagris gallopavo] diamond 159 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
27632719 27632719 PRJNA999043_P_NODE_24484_length_242_cov_0.911243_g24389_i0 PRJNA999043 24484 242 0.911243 2.20520806 Chordata 7711 Chordata Chordata 52.8 1.09e-5   NR XP_051779371.1 27687 g24389 i0 52.5 2.97520661157025 40 19 49.6 0 241 122 691 730 XP_051779371.1 probable E3 ubiquitin-protein ligase HERC4 isoform X2 [Erpetoichthys calabaricus] diamond 720 53.1 0.994350282485876 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
27727731 27727731 PRJNA999043_P_NODE_22304_length_249_cov_0.875000_g22209_i0 PRJNA999043 22304 249 0.875 2.17875 Chordata 7711 Chordata Chordata 62.4 4.97e-9   NR XP_039909930.1 43150 g22209 i0 66.7 9.21686746987952 45 15 54.2 0 249 115 734 778 XP_039909930.1 LOW QUALITY PROTEIN: stAR-related lipid transfer protein 13-like, partial [Hirundo rustica] diamond 2295 62.8 0.993630573248408 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Hirundinidae Hirundo Hirundo rustica
27847691 27847691 PRJNA999043_P_NODE_20924_length_258_cov_0.859459_g20829_i0 PRJNA999043 20924 258 0.859459 2.21740422 Mycteria americana 33587 Chordata Chordata 87.4 1.04e-18   NR KAK4830788.1 33587 g20829 i0 62.5 1.67441860465116 72 27 83.7 0 221 6 172 243 KAK4830788.1 hypothetical protein QYF61_013621 [Mycteria americana] diamond 432 87.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
28763369 28763369 PRJNA999043_P_NODE_17367_length_312_cov_0.857741_g17272_i0 PRJNA999043 17367 312 0.857741 2.67615192 Grus japonensis 30415 Chordata Chordata 65.9 2.14e-10   NR GAB0181774.1 30415 g17272 i0 41.1 3.43269230769231 90 53 86.5 0 272 3 94 183 GAB0181774.1 hypothetical protein GRJ2_000642700 [Grus japonensis] diamond 1071 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
29653055 29653055 PRJNA999043_P_NODE_23510_length_245_cov_0.895349_g23415_i0 PRJNA999043 23510 245 0.895349 2.19360505 Chordata 7711 Chordata Chordata 52.4 1.5e-5   NR XP_006001705.1 7897 g23415 i0 87.5 4.99591836734694 24 3 29.4 0 194 123 141 164 XP_006001705.1 dual specificity protein kinase CLK2 [Latimeria chalumnae] diamond 1224 52.8 0.992424242424242 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
30406088 30406088 PRJNA999043_P_NODE_22533_length_248_cov_0.880000_g22438_i0 PRJNA999043 22533 248 0.88 2.1824 Ovis aries 9940 Chordata Chordata 63.5 1.82e-9   NR XDA77494.1 9940 g22438 i0 52.5 0.967741935483871 80 38 96.8 0 4 243 236 315 XDA77494.1 hypothetical protein R6Z07_007693 [Ovis aries] diamond 240 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
31638260 31638260 PRJNA999043_P_NODE_24496_length_242_cov_0.911243_g24401_i0 PRJNA999043 24496 242 0.911243 2.20520806 Alectoris rufa 9079 Chordata Chordata 47 7.54e-4   NR CAK6567702.1 9079 g24401 i0 41.9 0.768595041322314 62 29 68.2 1 59 223 133 194 CAK6567702.1 unnamed protein product [Alectoris rufa] diamond 186 47 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa
31859652 31859652 PRJNA999043_P_NODE_16597_length_326_cov_3.189723_g16502_i0 PRJNA999043 16597 326 3.189723 10.398496979999999 Bufotes viridis 30338 Chordata Chordata 67 8.5e-11   NR CAK8641430.1 30338 g16502 i0 48.8 2.17177914110429 86 42 78.2 2 2 256 136 220 CAK8641430.1 Transposable element Tc3 transposase [Bufotes viridis] diamond 708 67.4 0.99406528189911 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
31986200 31986200 PRJNA999043_P_NODE_23958_length_244_cov_0.888889_g23863_i0 PRJNA999043 23958 244 0.888889 2.16888916 Alectoris rufa 9079 Chordata Chordata 48.5 8.88e-5   NR CAK6566379.1 9079 g23863 i0 64.5 0.762295081967213 31 11 38.1 0 113 205 77 107 CAK6566379.1 unnamed protein product [Alectoris rufa] diamond 186 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Alectoris Alectoris rufa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;