RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA998413" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA998413 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27595380 27595380 PRJNA998413_S_NODE_14984_length_177_cov_4.754386_g14953_i0 PRJNA998413 14984 177 4.754386 8.41526322 Trypanosoma brucei gambiense DAL972 679716 Euglenozoa other_Eukaryota 59.3 1.42e-9   NR XP_011775218.1 679716 g14953 i0 75.7 0.627118644067797 37 9 62.7 0 177 67 56 92 XP_011775218.1 hypothetical protein, unlikely [Trypanosoma brucei gambiense DAL972] diamond 111 59.3 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
28479359 28479359 PRJNA998413_S_NODE_5066_length_273_cov_3.795238_g5035_i0 PRJNA998413 5066 273 3.795238 10.36099974 Trypanosoma conorhini 83891 Euglenozoa other_Eukaryota 150 1.49e-44   NR XP_029226594.1 83891 g5035 i0 75.6 1.97802197802198 90 22 98.9 0 3 272 46 135 XP_029226594.1 60S ribosomal protein L35A [Trypanosoma conorhini] diamond 540 150 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma conorhini
30974527 30974527 PRJNA998413_S_NODE_7894_length_239_cov_3.045455_g7863_i0 PRJNA998413 7894 239 3.045455 7.27863745 Trypanosoma brucei gambiense DAL972 679716 Euglenozoa other_Eukaryota 79 7.74e-17   NR XP_011772066.1 679716 g7863 i0 64.5 3.10041841004184 62 22 77.8 0 238 53 49 110 XP_011772066.1 ribosomal protein S25, putative [Trypanosoma brucei gambiense DAL972] diamond 741 79 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;