RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA998413" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA998413 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27974130 27974130 PRJNA998413_S_NODE_9225_length_228_cov_1.624242_g9194_i0 PRJNA998413 9225 228 1.624242 3.70327176 Symbiodinium sp. KB8 230985 SAR_Eukaryotes SAR_Eukaryotes 62.4 1.39e-9   NR CAE7845595.1 230985 g9194 i0 58.9 0.736842105263158 56 23 73.7 0 218 51 163 218 CAE7845595.1 RPL6 [Symbiodinium sp. KB8] diamond 168 62.4 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium sp. KB8
29963405 29963405 PRJNA998413_S_NODE_3431_length_308_cov_1.914286_g3400_i0 PRJNA998413 3431 308 1.914286 5.89600088 Symbiodinium sp. KB8 230985 SAR_Eukaryotes SAR_Eukaryotes 134 4.86e-35   NR CAE7914721.1 230985 g3400 i0 62.4 0.983766233766234 101 38 98.4 0 306 4 303 403 CAE7914721.1 NME7 [Symbiodinium sp. KB8] diamond 303 134 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium sp. KB8
31738912 31738912 PRJNA998413_S_NODE_11377_length_215_cov_1.322368_g11346_i0 PRJNA998413 11377 215 1.322368 2.8430912 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 100 1.41e-23   NR KAG1704188.1 4784 g11346 i0 70.4 11.9720930232558 71 19 96.3 1 213 7 248 318 KAG1704188.1 hypothetical protein DVH05_006198 [Phytophthora capsici] diamond 2574 101 0.99009900990099 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;