RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA994052" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA994052 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
976271 976271 PRJNA994052_P_NODE_28281_length_286_cov_39.497653_g27039_i0 PRJNA994052 28281 286 39.497653 112.96328758 FCB group 1783270 Bacteria Bacteria 68.2 6.5e-11   NR MBK8246460.1 2026742 g27039 i0 42.5 1.84615384615385 87 50 91.3 0 20 280 99 185 MBK8246460.1 hypothetical protein [Gemmatimonadota bacterium] diamond 528 68.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
4804129 4804129 PRJNA994052_P_NODE_22384_length_303_cov_4.434783_g21156_i0 PRJNA994052 22384 303 4.434783 13.43739249 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 184 1.86e-54   NR MBL8981626.1 2026742 g21156 i0 92.2 1.00990099009901 102 4 97 1 303 10 137 238 MBL8981626.1 serine--tRNA ligase [Gemmatimonadota bacterium] diamond 306 184 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31954556 31954556 PRJNA994052_P_NODE_19777_length_309_cov_30.822034_g18554_i0 PRJNA994052 19777 309 30.822034 95.24008506 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 176 2.15e-53   NR MBL8980891.1 2026742 g18554 i0 92.1 0.980582524271845 101 5 98.1 1 7 309 48 145 MBL8980891.1 LON peptidase substrate-binding domain-containing protein [Gemmatimonadota bacterium] diamond 303 176 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;