RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA994052" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA994052 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27247737 27247737 PRJNA994052_P_NODE_53203_length_236_cov_17.717791_g51948_i0 PRJNA994052 53203 236 17.717791 41.81398676 Deltaproteobacteria bacterium GWA2_55_82 1797810 Bacteria Bacteria 68.9 5.15e-13   NR OGP17662.1 1797810 g51948 i0 58.8 0.648305084745763 51 21 64.8 0 235 83 47 97 OGP17662.1 MAG: hypothetical protein A2Z79_05165 [Deltaproteobacteria bacterium GWA2_55_82] diamond 153 68.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium GWA2_55_82
31606718 31606718 PRJNA994052_P_NODE_18616_length_311_cov_18.558824_g17394_i0 PRJNA994052 18616 311 18.558824 57.71794264 Deltaproteobacteria bacterium RBG_13_52_11b 1797830 Bacteria Bacteria 64.7 1.64e-9   NR OGP59816.1 1797830 g17394 i0 64.4 1.30225080385852 45 16 43.4 0 150 16 892 936 OGP59816.1 MAG: hypothetical protein A2162_01495 [Deltaproteobacteria bacterium RBG_13_52_11b] diamond 405 64.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_52_11b

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;