RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA994052" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA994052 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16279601 16279601 PRJNA994052_P_NODE_70213_length_212_cov_30.280576_g68957_i0 PRJNA994052 70213 212 30.280576 64.19482112 Bodo saltans 75058 Euglenozoa other_Eukaryota 63.5 1.12e-9   NR CUE79017.1 75058 g68957 i0 57.9 1.61320754716981 57 24 80.7 0 178 8 103 159 CUE79017.1 Hypothetical protein, putative [Bodo saltans] diamond 342 63.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
26804885 26804885 PRJNA994052_P_NODE_13201_length_316_cov_27.218107_g11981_i0 PRJNA994052 13201 316 27.218107 86.00921812 Euglena gracilis 3039 Euglenozoa other_Eukaryota 87.8 1.2e-17   NR 6TDY_D 3039 g11981 i0 81.6 0.465189873417722 49 9 46.5 0 4 150 414 462 6TDY_D Chain D, ATP synthase subunit beta [Euglena gracilis] diamond 147 87.8 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
27342790 27342790 PRJNA994052_P_NODE_72683_length_209_cov_24.727941_g71427_i0 PRJNA994052 72683 209 24.727941 51.68139669 Euglena gracilis 3039 Euglenozoa other_Eukaryota 62 4.76e-10   NR QLA09586.1 3039 g71427 i0 53.8 0.746411483253589 52 24 74.6 0 206 51 88 139 QLA09586.1 40S small subunit ribosomal protein eS17 [Euglena gracilis] diamond 156 62 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
29268440 29268440 PRJNA994052_P_NODE_13649_length_315_cov_23.471074_g12428_i0 PRJNA994052 13649 315 23.471074 73.9338831 Phytomonas sp. EM1 479712 Euglenozoa other_Eukaryota 93.2 1.19e-21   NR CCW60647.1 479712 g12428 i0 76 2.38095238095238 50 12 47.6 0 1 150 58 107 CCW60647.1 unnamed protein product [Phytomonas sp. EM1] diamond 750 93.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Phytomonas Phytomonas sp. EM1
29426299 29426299 PRJNA994052_P_NODE_42909_length_253_cov_22.011111_g41661_i0 PRJNA994052 42909 253 22.011111 55.68811083 Euglena gracilis 3039 Euglenozoa other_Eukaryota 88.6 2.19e-20   NR QLA09635.1 3039 g41661 i0 68.5 0.865612648221344 73 23 86.6 0 245 27 44 116 QLA09635.1 60S large subunit ribosomal protein eL34 [Euglena gracilis] diamond 219 88.6 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
30406055 30406055 PRJNA994052_P_NODE_78373_length_202_cov_84.581395_g77116_i0 PRJNA994052 78373 202 84.581395 170.8544179 Euglena gracilis 3039 Euglenozoa other_Eukaryota 47.4 5.14e-4   NR AAB23241.1 3039 g77116 i0 63.6 0.49009900990099 33 12 49 0 172 74 618 650 AAB23241.1 86 kda articulin=major membrane skeletal protein [Euglena gracilis, Peptide, 650 aa] [Euglena gracilis] diamond 99 47.4 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
30721473 30721473 PRJNA994052_P_NODE_67994_length_215_cov_16.387324_g66738_i0 PRJNA994052 67994 215 16.387324 35.2327466 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 103 2.83e-26   NR KAJ9460633.1 91374 g66738 i0 87.7 0.906976744186046 65 8 90.7 0 202 8 1 65 KAJ9460633.1 hypothetical protein DIPPA_26697 [Diplonema papillatum] diamond 195 103 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;