RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA993416" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA993416 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29394968 29394968 PRJNA993416_P_NODE_3329_length_466_cov_2.900763_g3224_i0 PRJNA993416 3329 466 2.900763 13.51755558 Minisyncoccota bacterium 2053589 Bacteria Bacteria 79.7 2.72e-15   NR MFA5766569.1 2053589 g3224 i0 37.9 1.24248927038627 95 59 61.2 0 286 2 5 99 MFA5766569.1 putative metallopeptidase [Candidatus Paceibacterota bacterium] diamond 579 79.7 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29716230 29716230 PRJNA993416_P_NODE_10630_length_268_cov_1.579487_g10525_i0 PRJNA993416 10630 268 1.579487 4.23302516 Bacteria 2 Bacteria Bacteria 81.6 1.05e-15   NR MFA6437633.1 2053589 g10525 i0 45.9 2.8544776119403 85 46 95.1 0 262 8 154 238 MFA6437633.1 NAD-dependent DNA ligase LigA [Candidatus Paceibacterota bacterium] diamond 765 81.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32807716 32807716 PRJNA993416_P_NODE_4020_length_420_cov_2.492795_g3915_i0 PRJNA993416 4020 420 2.492795 10.469739 Minisyncoccota bacterium 2053589 Bacteria Bacteria 77 8.97e-14   NR MFA5715286.1 2053589 g3915 i0 31 1.01428571428571 142 78 95 3 412 14 133 263 MFA5715286.1 glycosyltransferase family 9 protein [Candidatus Paceibacterota bacterium] diamond 426 77 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;