RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA993416" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA993416 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7353588 7353588 PRJNA993416_P_NODE_14786_length_245_cov_0.895349_g14681_i0 PRJNA993416 14786 245 0.895349 2.19360505 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 124 1.04e-30   NR HTC25298.1 2448054 g14681 i0 80.5 2.87755102040816 77 15 94.3 0 232 2 12 88 HTC25298.1 arylsulfatase [Gemmatimonadales bacterium] diamond 705 124 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27469041 27469041 PRJNA993416_P_NODE_443_length_1093_cov_2.138235_g384_i0 PRJNA993416 443 1093 2.138235 23.37090855 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 94.7 2.41e-18   NR HET9004553.1 2026741 g384 i0 32.3 0.535224153705398 195 129 52.7 1 92 667 34 228 HET9004553.1 PspA/IM30 family protein [Gemmatimonadaceae bacterium] diamond 585 94.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28548496 28548496 PRJNA993416_P_NODE_2167_length_585_cov_1.847656_g2063_i0 PRJNA993416 2167 585 1.847656 10.8087876 Bacteria 2 Bacteria Bacteria 76.3 2.28e-13   NR MFN2397700.1 2026741 g2063 i0 46.2 3.23076923076923 78 36 40 2 300 533 77 148 MFN2397700.1 HNH endonuclease [Gemmatimonadaceae bacterium] diamond 1890 76.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32176359 32176359 PRJNA993416_P_NODE_3058_length_489_cov_1.230769_g2953_i0 PRJNA993416 3058 489 1.230769 6.01846041 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 163 5.19e-44   NR MBT4504174.1 2026742 g2953 i0 64.3 1.60736196319018 129 46 79.1 0 96 482 26 154 MBT4504174.1 hypothetical protein [Gemmatimonadota bacterium] diamond 786 163 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;